Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2126 and Dsui_2127 are separated by 67 nucleotides Dsui_2127 and Dsui_2128 are separated by 143 nucleotides
Dsui_2126: Dsui_2126 - alanine dehydrogenase, at 2,254,483 to 2,255,574
_2126
Dsui_2127: Dsui_2127 - flavodoxin reductase family protein, at 2,255,642 to 2,256,430
_2127
Dsui_2128: Dsui_2128 - uncharacterized protein involved in outer membrane biogenesis, at 2,256,574 to 2,259,795
_2128
Position (kb)
2255
2256
2257 Strain fitness (log2 ratio)
-2
-1
0
1 at 2254.675 kb on - strand, within Dsui_2126 at 2254.770 kb on - strand, within Dsui_2126 at 2255.248 kb on - strand, within Dsui_2126 at 2255.255 kb on + strand at 2255.517 kb on + strand at 2255.847 kb on - strand at 2255.990 kb on - strand at 2256.090 kb on - strand, within Dsui_2127 at 2256.123 kb on - strand at 2256.128 kb on - strand at 2256.128 kb on - strand, within Dsui_2127 at 2256.172 kb on + strand, within Dsui_2127 at 2256.440 kb on + strand at 2256.440 kb on + strand at 2256.448 kb on - strand at 2256.448 kb on - strand at 2256.491 kb on + strand at 2256.499 kb on - strand at 2256.571 kb on + strand at 2256.626 kb on - strand at 2256.651 kb on + strand at 2256.745 kb on + strand at 2256.762 kb on + strand at 2256.770 kb on - strand at 2256.827 kb on - strand at 2256.910 kb on + strand, within Dsui_2128 at 2256.986 kb on + strand, within Dsui_2128 at 2257.181 kb on - strand, within Dsui_2128 at 2257.276 kb on + strand, within Dsui_2128 at 2257.304 kb on + strand, within Dsui_2128 at 2257.322 kb on - strand, within Dsui_2128
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 2,254,675 - Dsui_2126 0.18 -0.3 2,254,770 - Dsui_2126 0.26 -1.3 2,255,248 - Dsui_2126 0.70 -0.6 2,255,255 + +0.7 2,255,517 + -1.9 2,255,847 - -0.4 2,255,990 - +0.6 2,256,090 - Dsui_2127 0.57 -0.9 2,256,123 - +0.6 2,256,128 - +0.6 2,256,128 - Dsui_2127 0.62 -2.5 2,256,172 + Dsui_2127 0.67 -0.4 2,256,440 + -0.9 2,256,440 + +0.6 2,256,448 - -1.4 2,256,448 - -0.9 2,256,491 + -1.4 2,256,499 - -0.4 2,256,571 + +0.6 2,256,626 - -1.4 2,256,651 + +0.6 2,256,745 + -1.4 2,256,762 + -0.5 2,256,770 - -1.4 2,256,827 - +0.6 2,256,910 + Dsui_2128 0.10 +0.6 2,256,986 + Dsui_2128 0.13 -1.5 2,257,181 - Dsui_2128 0.19 -0.4 2,257,276 + Dsui_2128 0.22 +0.6 2,257,304 + Dsui_2128 0.23 +0.1 2,257,322 - Dsui_2128 0.23 -2.4
Or see this region's nucleotide sequence