Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2072 and Dsui_2073 are separated by 153 nucleotides Dsui_2073 and Dsui_2074 are separated by 218 nucleotides Dsui_2074 and Dsui_2075 are separated by 647 nucleotides
Dsui_2072: Dsui_2072 - Pirin-related protein, at 2,190,781 to 2,191,698
_2072
Dsui_2073: Dsui_2073 - Uncharacterized protein conserved in bacteria (DUF2242), at 2,191,852 to 2,192,358
_2073
Dsui_2074: Dsui_2074 - phasin family protein, at 2,192,577 to 2,192,972
_2074
Dsui_2075: Dsui_2075 - nucleotidyltransferase/DNA polymerase involved in DNA repair, at 2,193,620 to 2,194,783
_2075
Position (kb)
2192
2193 Strain fitness (log2 ratio)
-2
-1
0
1 at 2191.599 kb on + strand, within Dsui_2072 at 2191.619 kb on + strand at 2191.780 kb on + strand at 2192.118 kb on + strand at 2192.212 kb on + strand at 2192.439 kb on + strand at 2192.525 kb on + strand at 2192.651 kb on + strand at 2192.676 kb on + strand, within Dsui_2074 at 2192.822 kb on + strand at 2192.841 kb on - strand, within Dsui_2074 at 2192.862 kb on - strand, within Dsui_2074 at 2192.862 kb on - strand, within Dsui_2074 at 2192.909 kb on + strand, within Dsui_2074 at 2192.909 kb on + strand at 2192.909 kb on + strand at 2192.917 kb on - strand, within Dsui_2074 at 2192.917 kb on - strand, within Dsui_2074 at 2192.917 kb on - strand, within Dsui_2074 at 2192.948 kb on + strand at 2192.955 kb on + strand at 2193.000 kb on - strand at 2193.022 kb on - strand at 2193.039 kb on + strand at 2193.278 kb on + strand at 2193.286 kb on - strand at 2193.286 kb on - strand at 2193.543 kb on + strand at 2193.651 kb on + strand at 2193.702 kb on + strand at 2193.710 kb on - strand at 2193.767 kb on + strand, within Dsui_2075 at 2193.831 kb on + strand, within Dsui_2075 at 2193.963 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 2,191,599 + Dsui_2072 0.89 -0.3 2,191,619 + -0.3 2,191,780 + -1.3 2,192,118 + +0.7 2,192,212 + +0.7 2,192,439 + +0.7 2,192,525 + -0.3 2,192,651 + +0.7 2,192,676 + Dsui_2074 0.25 -2.5 2,192,822 + +0.7 2,192,841 - Dsui_2074 0.67 -1.4 2,192,862 - Dsui_2074 0.72 -0.0 2,192,862 - Dsui_2074 0.72 -0.5 2,192,909 + Dsui_2074 0.84 -0.9 2,192,909 + -1.3 2,192,909 + -0.9 2,192,917 - Dsui_2074 0.86 -0.9 2,192,917 - Dsui_2074 0.86 -0.7 2,192,917 - Dsui_2074 0.86 -0.4 2,192,948 + +0.7 2,192,955 + +0.7 2,193,000 - +0.3 2,193,022 - -0.3 2,193,039 + +0.7 2,193,278 + +0.7 2,193,286 - -0.9 2,193,286 - -0.3 2,193,543 + -1.9 2,193,651 + +0.7 2,193,702 + +0.7 2,193,710 - +0.7 2,193,767 + Dsui_2075 0.13 +0.7 2,193,831 + Dsui_2075 0.18 -0.3 2,193,963 - +0.7
Or see this region's nucleotide sequence