Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2006 and Dsui_2007 are separated by 43 nucleotides Dsui_2007 and Dsui_2008 are separated by 21 nucleotides
Dsui_2006: Dsui_2006 - putative sodium:solute symporter, VC_2705 subfamily, at 2,114,845 to 2,116,887
_2006
Dsui_2007: Dsui_2007 - putative solute:sodium symporter small subunit, at 2,116,931 to 2,117,197
_2007
Dsui_2008: Dsui_2008 - tetratricopeptide repeat protein, at 2,117,219 to 2,117,806
_2008
Position (kb)
2116
2117
2118 Strain fitness (log2 ratio)
-2
-1
0
1 at 2115.973 kb on - strand, within Dsui_2006 at 2116.020 kb on + strand, within Dsui_2006 at 2116.057 kb on + strand, within Dsui_2006 at 2116.107 kb on + strand, within Dsui_2006 at 2116.128 kb on + strand, within Dsui_2006 at 2116.139 kb on + strand, within Dsui_2006 at 2116.152 kb on - strand at 2116.189 kb on + strand, within Dsui_2006 at 2116.362 kb on + strand, within Dsui_2006 at 2116.370 kb on - strand, within Dsui_2006 at 2116.440 kb on + strand, within Dsui_2006 at 2116.447 kb on + strand, within Dsui_2006 at 2116.459 kb on - strand, within Dsui_2006 at 2116.596 kb on - strand at 2116.601 kb on - strand at 2116.709 kb on + strand at 2116.717 kb on - strand at 2116.835 kb on + strand at 2116.853 kb on + strand at 2116.889 kb on + strand at 2116.921 kb on + strand at 2116.921 kb on + strand at 2116.921 kb on + strand at 2116.924 kb on - strand at 2116.929 kb on - strand at 2116.929 kb on - strand at 2117.024 kb on - strand, within Dsui_2007 at 2117.067 kb on + strand, within Dsui_2007 at 2117.072 kb on + strand, within Dsui_2007 at 2117.072 kb on + strand, within Dsui_2007 at 2117.164 kb on + strand, within Dsui_2007 at 2117.304 kb on - strand at 2117.349 kb on + strand, within Dsui_2008 at 2117.462 kb on + strand, within Dsui_2008 at 2117.486 kb on - strand, within Dsui_2008 at 2117.502 kb on - strand, within Dsui_2008 at 2117.517 kb on + strand, within Dsui_2008 at 2117.641 kb on + strand, within Dsui_2008 at 2117.648 kb on - strand, within Dsui_2008 at 2117.695 kb on + strand at 2117.703 kb on - strand, within Dsui_2008 at 2117.715 kb on + strand, within Dsui_2008 at 2117.730 kb on + strand, within Dsui_2008 at 2117.774 kb on + strand at 2117.826 kb on - strand at 2117.828 kb on + strand at 2117.836 kb on - strand at 2118.095 kb on + strand at 2118.119 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 2,115,973 - Dsui_2006 0.55 -1.6 2,116,020 + Dsui_2006 0.58 -1.9 2,116,057 + Dsui_2006 0.59 +0.7 2,116,107 + Dsui_2006 0.62 +0.7 2,116,128 + Dsui_2006 0.63 -1.3 2,116,139 + Dsui_2006 0.63 +0.7 2,116,152 - +0.7 2,116,189 + Dsui_2006 0.66 -1.3 2,116,362 + Dsui_2006 0.74 -0.9 2,116,370 - Dsui_2006 0.75 -1.9 2,116,440 + Dsui_2006 0.78 -1.3 2,116,447 + Dsui_2006 0.78 -0.3 2,116,459 - Dsui_2006 0.79 +0.7 2,116,596 - -0.3 2,116,601 - +0.7 2,116,709 + -0.3 2,116,717 - +0.7 2,116,835 + -0.9 2,116,853 + +0.7 2,116,889 + -0.3 2,116,921 + -0.3 2,116,921 + +0.7 2,116,921 + +0.7 2,116,924 - +0.7 2,116,929 - -1.3 2,116,929 - -0.3 2,117,024 - Dsui_2007 0.35 -1.3 2,117,067 + Dsui_2007 0.51 -0.3 2,117,072 + Dsui_2007 0.53 +0.7 2,117,072 + Dsui_2007 0.53 -0.9 2,117,164 + Dsui_2007 0.87 -0.3 2,117,304 - +0.7 2,117,349 + Dsui_2008 0.22 -1.3 2,117,462 + Dsui_2008 0.41 -0.3 2,117,486 - Dsui_2008 0.45 -0.3 2,117,502 - Dsui_2008 0.48 +0.7 2,117,517 + Dsui_2008 0.51 -0.9 2,117,641 + Dsui_2008 0.72 -0.3 2,117,648 - Dsui_2008 0.73 -0.3 2,117,695 + -0.3 2,117,703 - Dsui_2008 0.82 -0.9 2,117,715 + Dsui_2008 0.84 +0.7 2,117,730 + Dsui_2008 0.87 +0.7 2,117,774 + +0.7 2,117,826 - +0.7 2,117,828 + -0.3 2,117,836 - +0.7 2,118,095 + -1.3 2,118,119 - +0.7
Or see this region's nucleotide sequence