Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1927 and Dsui_1928 are separated by 238 nucleotides Dsui_1928 and Dsui_1929 are separated by 25 nucleotides
Dsui_1927: Dsui_1927 - hypothetical protein, at 2,037,809 to 2,038,468
_1927
Dsui_1928: Dsui_1928 - cytochrome c, mono- and diheme variants family, at 2,038,707 to 2,039,060
_1928
Dsui_1929: Dsui_1929 - Prokaryotic membrane lipoprotein lipid attachment site/Cytochrome D1 heme domain protein, at 2,039,086 to 2,040,279
_1929
Position (kb)
2038
2039
2040 Strain fitness (log2 ratio)
-2
-1
0
1 at 2037.715 kb on + strand at 2037.734 kb on + strand at 2037.747 kb on - strand at 2037.747 kb on - strand at 2037.775 kb on - strand at 2037.777 kb on + strand at 2037.793 kb on + strand at 2037.793 kb on + strand at 2037.793 kb on + strand at 2037.801 kb on - strand at 2037.906 kb on - strand at 2037.907 kb on + strand, within Dsui_1927 at 2037.910 kb on + strand, within Dsui_1927 at 2037.910 kb on + strand at 2037.912 kb on + strand, within Dsui_1927 at 2037.912 kb on + strand, within Dsui_1927 at 2037.912 kb on + strand, within Dsui_1927 at 2037.912 kb on + strand at 2037.912 kb on + strand, within Dsui_1927 at 2037.920 kb on - strand, within Dsui_1927 at 2037.920 kb on - strand, within Dsui_1927 at 2037.920 kb on - strand, within Dsui_1927 at 2037.920 kb on - strand, within Dsui_1927 at 2037.920 kb on - strand, within Dsui_1927 at 2037.920 kb on - strand, within Dsui_1927 at 2037.920 kb on - strand, within Dsui_1927 at 2037.920 kb on - strand, within Dsui_1927 at 2037.925 kb on - strand, within Dsui_1927 at 2037.927 kb on - strand, within Dsui_1927 at 2037.929 kb on + strand, within Dsui_1927 at 2037.931 kb on + strand at 2037.931 kb on + strand, within Dsui_1927 at 2037.939 kb on - strand, within Dsui_1927 at 2037.939 kb on - strand, within Dsui_1927 at 2037.939 kb on - strand, within Dsui_1927 at 2037.939 kb on - strand, within Dsui_1927 at 2037.939 kb on - strand, within Dsui_1927 at 2038.006 kb on - strand, within Dsui_1927 at 2038.020 kb on - strand, within Dsui_1927 at 2038.063 kb on + strand, within Dsui_1927 at 2038.066 kb on + strand, within Dsui_1927 at 2038.071 kb on - strand, within Dsui_1927 at 2038.071 kb on - strand, within Dsui_1927 at 2038.094 kb on - strand, within Dsui_1927 at 2038.138 kb on - strand, within Dsui_1927 at 2038.143 kb on - strand, within Dsui_1927 at 2038.160 kb on - strand, within Dsui_1927 at 2038.191 kb on + strand, within Dsui_1927 at 2038.241 kb on - strand, within Dsui_1927 at 2038.329 kb on - strand, within Dsui_1927 at 2038.367 kb on - strand at 2038.408 kb on - strand at 2038.434 kb on - strand at 2038.438 kb on + strand at 2038.458 kb on - strand at 2038.485 kb on - strand at 2038.532 kb on + strand at 2038.545 kb on + strand at 2038.545 kb on + strand at 2038.548 kb on - strand at 2038.550 kb on + strand at 2038.553 kb on - strand at 2038.555 kb on + strand at 2038.558 kb on - strand at 2038.561 kb on + strand at 2038.563 kb on - strand at 2038.566 kb on + strand at 2038.568 kb on - strand at 2038.569 kb on - strand at 2038.574 kb on - strand at 2038.577 kb on + strand at 2038.755 kb on - strand at 2038.755 kb on - strand, within Dsui_1928 at 2038.812 kb on + strand, within Dsui_1928 at 2038.874 kb on - strand, within Dsui_1928 at 2038.874 kb on - strand, within Dsui_1928 at 2038.885 kb on + strand, within Dsui_1928 at 2038.891 kb on + strand, within Dsui_1928 at 2038.905 kb on + strand, within Dsui_1928 at 2038.913 kb on - strand at 2038.920 kb on - strand, within Dsui_1928 at 2038.945 kb on + strand, within Dsui_1928 at 2038.980 kb on - strand at 2039.033 kb on + strand at 2039.142 kb on - strand at 2039.234 kb on - strand, within Dsui_1929 at 2039.312 kb on + strand, within Dsui_1929 at 2039.322 kb on + strand, within Dsui_1929 at 2039.353 kb on + strand, within Dsui_1929 at 2039.451 kb on + strand, within Dsui_1929 at 2039.480 kb on + strand, within Dsui_1929 at 2039.504 kb on + strand, within Dsui_1929 at 2039.837 kb on - strand, within Dsui_1929 at 2039.839 kb on + strand, within Dsui_1929 at 2039.862 kb on + strand, within Dsui_1929 at 2039.962 kb on + strand, within Dsui_1929
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 2,037,715 + -1.2 2,037,734 + +0.4 2,037,747 - +0.8 2,037,747 - -2.1 2,037,775 - +0.8 2,037,777 + +0.8 2,037,793 + -0.2 2,037,793 + +0.8 2,037,793 + +0.8 2,037,801 - +0.8 2,037,906 - +0.8 2,037,907 + Dsui_1927 0.15 -0.8 2,037,910 + Dsui_1927 0.15 -1.2 2,037,910 + +0.8 2,037,912 + Dsui_1927 0.16 +0.2 2,037,912 + Dsui_1927 0.16 -0.8 2,037,912 + Dsui_1927 0.16 -0.8 2,037,912 + +0.8 2,037,912 + Dsui_1927 0.16 -0.2 2,037,920 - Dsui_1927 0.17 -1.8 2,037,920 - Dsui_1927 0.17 +0.8 2,037,920 - Dsui_1927 0.17 +0.8 2,037,920 - Dsui_1927 0.17 +0.8 2,037,920 - Dsui_1927 0.17 +0.8 2,037,920 - Dsui_1927 0.17 -0.2 2,037,920 - Dsui_1927 0.17 -1.2 2,037,920 - Dsui_1927 0.17 -0.2 2,037,925 - Dsui_1927 0.18 -0.2 2,037,927 - Dsui_1927 0.18 +0.8 2,037,929 + Dsui_1927 0.18 -0.2 2,037,931 + +0.8 2,037,931 + Dsui_1927 0.18 -1.2 2,037,939 - Dsui_1927 0.20 +0.8 2,037,939 - Dsui_1927 0.20 -0.8 2,037,939 - Dsui_1927 0.20 -0.2 2,037,939 - Dsui_1927 0.20 -0.8 2,037,939 - Dsui_1927 0.20 -2.2 2,038,006 - Dsui_1927 0.30 -0.2 2,038,020 - Dsui_1927 0.32 +0.8 2,038,063 + Dsui_1927 0.38 -1.2 2,038,066 + Dsui_1927 0.39 -0.2 2,038,071 - Dsui_1927 0.40 -0.2 2,038,071 - Dsui_1927 0.40 -1.6 2,038,094 - Dsui_1927 0.43 +0.2 2,038,138 - Dsui_1927 0.50 -0.2 2,038,143 - Dsui_1927 0.51 -0.8 2,038,160 - Dsui_1927 0.53 -2.1 2,038,191 + Dsui_1927 0.58 +0.8 2,038,241 - Dsui_1927 0.65 -0.2 2,038,329 - Dsui_1927 0.79 -1.2 2,038,367 - +0.8 2,038,408 - -0.2 2,038,434 - +0.8 2,038,438 + +0.8 2,038,458 - -0.2 2,038,485 - -0.8 2,038,532 + -0.8 2,038,545 + +0.8 2,038,545 + -0.2 2,038,548 - -0.8 2,038,550 + +0.8 2,038,553 - -0.2 2,038,555 + +0.8 2,038,558 - +0.8 2,038,561 + +0.8 2,038,563 - +0.8 2,038,566 + +0.8 2,038,568 - -1.8 2,038,569 - +0.8 2,038,574 - +0.8 2,038,577 + -0.2 2,038,755 - +0.8 2,038,755 - Dsui_1928 0.14 -0.2 2,038,812 + Dsui_1928 0.30 +0.8 2,038,874 - Dsui_1928 0.47 -0.2 2,038,874 - Dsui_1928 0.47 -1.2 2,038,885 + Dsui_1928 0.50 -0.2 2,038,891 + Dsui_1928 0.52 -1.5 2,038,905 + Dsui_1928 0.56 -1.1 2,038,913 - -0.2 2,038,920 - Dsui_1928 0.60 -0.2 2,038,945 + Dsui_1928 0.67 +0.8 2,038,980 - -0.8 2,039,033 + +0.5 2,039,142 - -0.2 2,039,234 - Dsui_1929 0.12 +0.8 2,039,312 + Dsui_1929 0.19 -0.2 2,039,322 + Dsui_1929 0.20 +0.8 2,039,353 + Dsui_1929 0.22 -0.2 2,039,451 + Dsui_1929 0.31 -1.5 2,039,480 + Dsui_1929 0.33 -0.2 2,039,504 + Dsui_1929 0.35 +0.8 2,039,837 - Dsui_1929 0.63 -0.2 2,039,839 + Dsui_1929 0.63 +0.8 2,039,862 + Dsui_1929 0.65 +0.2 2,039,962 + Dsui_1929 0.73 -2.4
Or see this region's nucleotide sequence