Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1924 and Dsui_1925 are separated by 984 nucleotides Dsui_1925 and Dsui_1926 are separated by 1 nucleotides
Dsui_1924: Dsui_1924 - ribonucleoside-diphosphate reductase, alpha subunit, at 2,031,197 to 2,034,043
_1924
Dsui_1925: Dsui_1925 - acetolactate synthase, large subunit, biosynthetic type, at 2,035,028 to 2,036,746
_1925
Dsui_1926: Dsui_1926 - acetolactate synthase, small (regulatory) subunit, at 2,036,748 to 2,037,065
_1926
Position (kb)
2035
2036
2037 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2034.288 kb on - strand at 2034.299 kb on + strand at 2034.299 kb on + strand at 2034.299 kb on + strand at 2034.302 kb on - strand at 2034.307 kb on - strand at 2034.418 kb on + strand at 2034.442 kb on + strand at 2034.457 kb on - strand at 2034.465 kb on - strand at 2034.562 kb on + strand at 2034.599 kb on + strand at 2034.617 kb on + strand at 2034.691 kb on + strand at 2034.699 kb on - strand at 2034.790 kb on - strand at 2034.811 kb on - strand at 2034.890 kb on + strand at 2035.232 kb on - strand, within Dsui_1925 at 2035.255 kb on + strand, within Dsui_1925 at 2035.395 kb on - strand, within Dsui_1925 at 2035.413 kb on + strand at 2035.477 kb on - strand at 2035.492 kb on + strand, within Dsui_1925 at 2035.512 kb on + strand, within Dsui_1925 at 2035.603 kb on - strand, within Dsui_1925 at 2035.672 kb on + strand, within Dsui_1925 at 2035.703 kb on - strand at 2035.703 kb on - strand, within Dsui_1925 at 2035.778 kb on + strand, within Dsui_1925 at 2035.793 kb on + strand, within Dsui_1925 at 2035.816 kb on - strand at 2035.860 kb on + strand at 2035.891 kb on + strand, within Dsui_1925 at 2035.958 kb on + strand, within Dsui_1925 at 2035.986 kb on + strand, within Dsui_1925 at 2036.004 kb on - strand at 2036.012 kb on + strand, within Dsui_1925 at 2036.029 kb on - strand at 2036.088 kb on + strand, within Dsui_1925 at 2036.088 kb on + strand, within Dsui_1925 at 2036.176 kb on + strand, within Dsui_1925 at 2036.204 kb on - strand at 2036.245 kb on - strand at 2036.252 kb on + strand, within Dsui_1925 at 2036.257 kb on + strand, within Dsui_1925 at 2036.265 kb on - strand, within Dsui_1925 at 2036.358 kb on - strand, within Dsui_1925 at 2036.446 kb on + strand, within Dsui_1925 at 2036.506 kb on + strand, within Dsui_1925 at 2036.506 kb on + strand, within Dsui_1925 at 2036.506 kb on + strand, within Dsui_1925 at 2036.594 kb on + strand at 2036.700 kb on - strand at 2036.710 kb on + strand at 2036.778 kb on + strand at 2036.778 kb on + strand at 2036.783 kb on + strand, within Dsui_1926 at 2036.835 kb on + strand, within Dsui_1926 at 2036.861 kb on - strand at 2036.976 kb on - strand at 2036.986 kb on + strand, within Dsui_1926 at 2036.996 kb on + strand, within Dsui_1926 at 2037.101 kb on - strand at 2037.248 kb on + strand at 2037.254 kb on + strand at 2037.254 kb on + strand at 2037.254 kb on + strand at 2037.276 kb on - strand at 2037.287 kb on + strand at 2037.294 kb on - strand at 2037.310 kb on - strand at 2037.380 kb on + strand at 2037.380 kb on + strand at 2037.403 kb on + strand at 2037.461 kb on + strand at 2037.469 kb on - strand at 2037.471 kb on + strand at 2037.471 kb on + strand at 2037.479 kb on - strand at 2037.481 kb on + strand at 2037.481 kb on + strand at 2037.481 kb on + strand at 2037.489 kb on - strand at 2037.489 kb on - strand at 2037.489 kb on - strand at 2037.489 kb on - strand at 2037.489 kb on - strand at 2037.489 kb on - strand at 2037.489 kb on - strand at 2037.491 kb on + strand at 2037.513 kb on - strand at 2037.536 kb on - strand at 2037.600 kb on - strand at 2037.602 kb on + strand at 2037.602 kb on + strand at 2037.607 kb on + strand at 2037.607 kb on + strand at 2037.610 kb on - strand at 2037.610 kb on - strand at 2037.615 kb on - strand at 2037.619 kb on + strand at 2037.643 kb on + strand at 2037.650 kb on - strand at 2037.667 kb on + strand at 2037.668 kb on + strand at 2037.668 kb on + strand at 2037.676 kb on - strand at 2037.715 kb on + strand at 2037.734 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 2,034,288 - +0.4 2,034,299 + -0.9 2,034,299 + -0.9 2,034,299 + -0.9 2,034,302 - +0.2 2,034,307 - +0.5 2,034,418 + +0.7 2,034,442 + -0.3 2,034,457 - -0.9 2,034,465 - -0.3 2,034,562 + +0.7 2,034,599 + -0.3 2,034,617 + -1.6 2,034,691 + +0.3 2,034,699 - -0.3 2,034,790 - +0.7 2,034,811 - +0.7 2,034,890 + +0.6 2,035,232 - Dsui_1925 0.12 -0.3 2,035,255 + Dsui_1925 0.13 -0.6 2,035,395 - Dsui_1925 0.21 -0.3 2,035,413 + -0.3 2,035,477 - -0.3 2,035,492 + Dsui_1925 0.27 -1.9 2,035,512 + Dsui_1925 0.28 +0.1 2,035,603 - Dsui_1925 0.33 -0.9 2,035,672 + Dsui_1925 0.37 -1.3 2,035,703 - +0.7 2,035,703 - Dsui_1925 0.39 -0.3 2,035,778 + Dsui_1925 0.44 -2.7 2,035,793 + Dsui_1925 0.45 +0.7 2,035,816 - -0.3 2,035,860 + +0.7 2,035,891 + Dsui_1925 0.50 -0.3 2,035,958 + Dsui_1925 0.54 -0.6 2,035,986 + Dsui_1925 0.56 -0.9 2,036,004 - -0.9 2,036,012 + Dsui_1925 0.57 -0.3 2,036,029 - -0.3 2,036,088 + Dsui_1925 0.62 +0.3 2,036,088 + Dsui_1925 0.62 +0.9 2,036,176 + Dsui_1925 0.67 -2.3 2,036,204 - +0.7 2,036,245 - -0.3 2,036,252 + Dsui_1925 0.71 +0.4 2,036,257 + Dsui_1925 0.71 -1.3 2,036,265 - Dsui_1925 0.72 -0.9 2,036,358 - Dsui_1925 0.77 -1.6 2,036,446 + Dsui_1925 0.82 +2.3 2,036,506 + Dsui_1925 0.86 +0.7 2,036,506 + Dsui_1925 0.86 -1.8 2,036,506 + Dsui_1925 0.86 -0.7 2,036,594 + +0.7 2,036,700 - -0.3 2,036,710 + -0.8 2,036,778 + -2.3 2,036,778 + -0.3 2,036,783 + Dsui_1926 0.11 -0.8 2,036,835 + Dsui_1926 0.27 +1.0 2,036,861 - +0.7 2,036,976 - +0.7 2,036,986 + Dsui_1926 0.75 +2.3 2,036,996 + Dsui_1926 0.78 +0.0 2,037,101 - -1.8 2,037,248 + -0.8 2,037,254 + -1.1 2,037,254 + +0.7 2,037,254 + -0.3 2,037,276 - +0.7 2,037,287 + -0.3 2,037,294 - -0.8 2,037,310 - -0.3 2,037,380 + +0.7 2,037,380 + +0.7 2,037,403 + +0.7 2,037,461 + -0.8 2,037,469 - -0.8 2,037,471 + +0.7 2,037,471 + -1.8 2,037,479 - -0.8 2,037,481 + -1.3 2,037,481 + -1.3 2,037,481 + -0.8 2,037,489 - -3.1 2,037,489 - +0.7 2,037,489 - -0.8 2,037,489 - +0.7 2,037,489 - +0.7 2,037,489 - -0.3 2,037,489 - -0.8 2,037,491 + +0.7 2,037,513 - -0.3 2,037,536 - -0.8 2,037,600 - -0.8 2,037,602 + +0.8 2,037,602 + -0.2 2,037,607 + -1.2 2,037,607 + +0.8 2,037,610 - -1.6 2,037,610 - -1.8 2,037,615 - +0.8 2,037,619 + -0.8 2,037,643 + -2.1 2,037,650 - +0.8 2,037,667 + -0.2 2,037,668 + -2.1 2,037,668 + -0.2 2,037,676 - +0.8 2,037,715 + -1.2 2,037,734 + +0.4
Or see this region's nucleotide sequence