Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1907 and Dsui_1908 are separated by 75 nucleotides Dsui_1908 and Dsui_1910 are separated by 362 nucleotides Dsui_1910 and Dsui_1911 are separated by 134 nucleotides
Dsui_1907: Dsui_1907 - transcriptional regulator, at 2,010,386 to 2,011,264
_1907
Dsui_1908: Dsui_1908 - putative Fe-S-cluster redox enzyme, at 2,011,340 to 2,012,671
_1908
Dsui_1910: Dsui_1910 - hypothetical protein, at 2,013,034 to 2,013,381
_1910
Dsui_1911: Dsui_1911 - ParB-like partition protein, at 2,013,516 to 2,014,454
_1911
Position (kb)
2011
2012
2013 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2010.364 kb on - strand at 2010.376 kb on + strand at 2010.394 kb on + strand at 2010.403 kb on - strand at 2010.413 kb on - strand at 2010.424 kb on - strand at 2010.497 kb on - strand at 2010.759 kb on + strand at 2010.780 kb on - strand, within Dsui_1907 at 2010.836 kb on - strand at 2010.836 kb on - strand at 2010.866 kb on + strand, within Dsui_1907 at 2010.874 kb on - strand, within Dsui_1907 at 2010.902 kb on + strand at 2010.904 kb on + strand, within Dsui_1907 at 2011.402 kb on - strand at 2011.463 kb on + strand at 2011.471 kb on - strand at 2011.477 kb on + strand, within Dsui_1908 at 2011.531 kb on + strand, within Dsui_1908 at 2011.552 kb on + strand, within Dsui_1908 at 2011.560 kb on - strand at 2011.655 kb on - strand at 2012.070 kb on + strand, within Dsui_1908 at 2012.100 kb on + strand, within Dsui_1908 at 2012.265 kb on + strand, within Dsui_1908 at 2012.488 kb on - strand, within Dsui_1908 at 2012.519 kb on + strand, within Dsui_1908 at 2012.704 kb on - strand at 2012.704 kb on - strand at 2012.724 kb on + strand at 2012.724 kb on + strand at 2013.264 kb on + strand, within Dsui_1910 at 2013.406 kb on - strand at 2013.443 kb on + strand at 2013.615 kb on - strand, within Dsui_1911
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 2,010,364 - +0.7 2,010,376 + +0.7 2,010,394 + -0.9 2,010,403 - +0.7 2,010,413 - -0.9 2,010,424 - -0.9 2,010,497 - -0.3 2,010,759 + -0.3 2,010,780 - Dsui_1907 0.45 -0.3 2,010,836 - -0.3 2,010,836 - +0.7 2,010,866 + Dsui_1907 0.55 -1.6 2,010,874 - Dsui_1907 0.56 -0.9 2,010,902 + -0.3 2,010,904 + Dsui_1907 0.59 -1.6 2,011,402 - -0.9 2,011,463 + +0.3 2,011,471 - -0.9 2,011,477 + Dsui_1908 0.10 +0.5 2,011,531 + Dsui_1908 0.14 +0.1 2,011,552 + Dsui_1908 0.16 +0.1 2,011,560 - -0.9 2,011,655 - -0.3 2,012,070 + Dsui_1908 0.55 -0.5 2,012,100 + Dsui_1908 0.57 +0.3 2,012,265 + Dsui_1908 0.69 +0.5 2,012,488 - Dsui_1908 0.86 +0.7 2,012,519 + Dsui_1908 0.89 +0.1 2,012,704 - -0.9 2,012,704 - +0.7 2,012,724 + +0.5 2,012,724 + +0.6 2,013,264 + Dsui_1910 0.66 -0.3 2,013,406 - +0.4 2,013,443 + -3.0 2,013,615 - Dsui_1911 0.11 -0.1
Or see this region's nucleotide sequence