Strain Fitness in Dechlorosoma suillum PS around Dsui_1802

Experiment: ALP with perchlorate 3 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_1800 and Dsui_1801 are separated by 151 nucleotidesDsui_1801 and Dsui_1802 are separated by 121 nucleotidesDsui_1802 and Dsui_1803 are separated by 163 nucleotides Dsui_1800: Dsui_1800 - transcriptional regulator, at 1,899,561 to 1,900,253 _1800 Dsui_1801: Dsui_1801 - ATPase involved in chromosome partitioning, at 1,900,405 to 1,901,022 _1801 Dsui_1802: Dsui_1802 - tRNA-Met, at 1,901,144 to 1,901,220 _1802 Dsui_1803: Dsui_1803 - 16S ribosomal RNA, at 1,901,384 to 1,902,805 _1803 Position (kb) 1901 1902Strain fitness (log2 ratio) -2 -1 0 1at 1900.195 kb on - strandat 1900.261 kb on - strandat 1900.345 kb on + strandat 1900.354 kb on + strandat 1900.396 kb on + strandat 1900.396 kb on + strandat 1900.399 kb on - strandat 1900.409 kb on + strandat 1900.428 kb on + strandat 1900.439 kb on + strandat 1900.456 kb on - strandat 1900.486 kb on + strand, within Dsui_1801at 1900.486 kb on + strand, within Dsui_1801at 1900.499 kb on + strand, within Dsui_1801at 1900.499 kb on + strand, within Dsui_1801at 1900.499 kb on + strand, within Dsui_1801at 1900.499 kb on + strand, within Dsui_1801at 1900.499 kb on + strand, within Dsui_1801at 1900.499 kb on + strand, within Dsui_1801at 1900.544 kb on + strand, within Dsui_1801at 1900.573 kb on + strand, within Dsui_1801at 1900.660 kb on + strand, within Dsui_1801at 1900.667 kb on + strand, within Dsui_1801at 1900.667 kb on + strand, within Dsui_1801at 1900.667 kb on + strand, within Dsui_1801at 1900.667 kb on + strand, within Dsui_1801at 1900.667 kb on + strand, within Dsui_1801at 1900.675 kb on - strand, within Dsui_1801at 1900.675 kb on - strand, within Dsui_1801at 1900.685 kb on + strand, within Dsui_1801at 1900.704 kb on + strand, within Dsui_1801at 1900.705 kb on - strand, within Dsui_1801at 1900.761 kb on - strand, within Dsui_1801at 1900.899 kb on + strand, within Dsui_1801at 1900.906 kb on + strand, within Dsui_1801at 1900.906 kb on + strand, within Dsui_1801at 1900.914 kb on - strand, within Dsui_1801at 1900.914 kb on - strand, within Dsui_1801at 1900.914 kb on - strand, within Dsui_1801at 1900.914 kb on - strand, within Dsui_1801at 1900.916 kb on + strand, within Dsui_1801at 1900.916 kb on + strand, within Dsui_1801at 1900.923 kb on + strand, within Dsui_1801at 1900.968 kb on + strandat 1900.979 kb on + strandat 1901.019 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM
remove
1,900,195 - -0.6
1,900,261 - +0.4
1,900,345 + +0.4
1,900,354 + -1.6
1,900,396 + +0.4
1,900,396 + +0.4
1,900,399 - -1.9
1,900,409 + -0.6
1,900,428 + -1.9
1,900,439 + +0.4
1,900,456 - +0.4
1,900,486 + Dsui_1801 0.13 +0.4
1,900,486 + Dsui_1801 0.13 -0.6
1,900,499 + Dsui_1801 0.15 +0.4
1,900,499 + Dsui_1801 0.15 -0.6
1,900,499 + Dsui_1801 0.15 -2.2
1,900,499 + Dsui_1801 0.15 -0.6
1,900,499 + Dsui_1801 0.15 -0.6
1,900,499 + Dsui_1801 0.15 +0.4
1,900,544 + Dsui_1801 0.22 -2.6
1,900,573 + Dsui_1801 0.27 -2.4
1,900,660 + Dsui_1801 0.41 -0.9
1,900,667 + Dsui_1801 0.42 +0.4
1,900,667 + Dsui_1801 0.42 -1.2
1,900,667 + Dsui_1801 0.42 -1.9
1,900,667 + Dsui_1801 0.42 +0.8
1,900,667 + Dsui_1801 0.42 -0.6
1,900,675 - Dsui_1801 0.44 -1.9
1,900,675 - Dsui_1801 0.44 -1.6
1,900,685 + Dsui_1801 0.45 -0.6
1,900,704 + Dsui_1801 0.48 +0.4
1,900,705 - Dsui_1801 0.49 -1.2
1,900,761 - Dsui_1801 0.58 +0.4
1,900,899 + Dsui_1801 0.80 -0.6
1,900,906 + Dsui_1801 0.81 -0.6
1,900,906 + Dsui_1801 0.81 -0.9
1,900,914 - Dsui_1801 0.82 +0.4
1,900,914 - Dsui_1801 0.82 -0.6
1,900,914 - Dsui_1801 0.82 -0.6
1,900,914 - Dsui_1801 0.82 -0.6
1,900,916 + Dsui_1801 0.83 +0.4
1,900,916 + Dsui_1801 0.83 -0.6
1,900,923 + Dsui_1801 0.84 -0.6
1,900,968 + +0.4
1,900,979 + -1.9
1,901,019 - -0.6

Or see this region's nucleotide sequence