Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1673 and Dsui_1674 are separated by 1 nucleotides Dsui_1674 and Dsui_1675 are separated by 4 nucleotides Dsui_1675 and Dsui_1676 are separated by 79 nucleotides Dsui_1676 and Dsui_1677 are separated by 50 nucleotides
Dsui_1673: Dsui_1673 - RNA polymerase sigma factor, sigma-70 family, at 1,760,494 to 1,761,000
_1673
Dsui_1674: Dsui_1674 - EAL domain-containing protein, at 1,761,002 to 1,761,721
_1674
Dsui_1675: Dsui_1675 - hypothetical protein, at 1,761,726 to 1,762,052
_1675
Dsui_1676: Dsui_1676 - biopolymer transport protein, at 1,762,132 to 1,762,623
_1676
Dsui_1677: Dsui_1677 - ribosomal protein S4, bacterial/organelle type, at 1,762,674 to 1,763,291
_1677
Position (kb)
1761
1762
1763 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1760.891 kb on + strand, within Dsui_1673 at 1760.896 kb on + strand, within Dsui_1673 at 1760.904 kb on - strand, within Dsui_1673 at 1761.000 kb on + strand at 1761.104 kb on + strand, within Dsui_1674 at 1761.147 kb on + strand, within Dsui_1674 at 1761.163 kb on - strand at 1761.195 kb on + strand at 1761.204 kb on - strand, within Dsui_1674 at 1761.400 kb on + strand at 1761.478 kb on - strand, within Dsui_1674 at 1761.525 kb on + strand, within Dsui_1674 at 1761.608 kb on - strand, within Dsui_1674 at 1761.716 kb on - strand at 1761.747 kb on + strand at 1761.774 kb on - strand at 1761.807 kb on - strand at 1761.874 kb on - strand, within Dsui_1675 at 1761.885 kb on - strand, within Dsui_1675 at 1761.924 kb on - strand, within Dsui_1675 at 1761.932 kb on + strand, within Dsui_1675 at 1762.048 kb on - strand at 1762.089 kb on + strand at 1762.110 kb on + strand at 1762.129 kb on + strand at 1762.164 kb on - strand at 1762.257 kb on - strand, within Dsui_1676 at 1762.268 kb on + strand at 1762.401 kb on + strand at 1762.409 kb on - strand, within Dsui_1676 at 1762.416 kb on + strand, within Dsui_1676 at 1762.417 kb on - strand, within Dsui_1676 at 1762.424 kb on - strand, within Dsui_1676 at 1762.524 kb on + strand, within Dsui_1676 at 1762.524 kb on + strand at 1762.532 kb on - strand, within Dsui_1676 at 1762.557 kb on + strand at 1762.560 kb on - strand, within Dsui_1676 at 1762.565 kb on - strand, within Dsui_1676 at 1762.589 kb on + strand at 1762.705 kb on - strand at 1762.721 kb on - strand at 1762.836 kb on + strand, within Dsui_1677 at 1763.031 kb on + strand, within Dsui_1677
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 1,760,891 + Dsui_1673 0.78 -0.8 1,760,896 + Dsui_1673 0.79 -1.3 1,760,904 - Dsui_1673 0.81 -1.8 1,761,000 + -0.8 1,761,104 + Dsui_1674 0.14 -2.1 1,761,147 + Dsui_1674 0.20 -1.3 1,761,163 - -1.3 1,761,195 + +0.2 1,761,204 - Dsui_1674 0.28 -0.8 1,761,400 + +0.2 1,761,478 - Dsui_1674 0.66 -3.6 1,761,525 + Dsui_1674 0.73 -2.1 1,761,608 - Dsui_1674 0.84 -2.1 1,761,716 - -1.3 1,761,747 + +0.2 1,761,774 - +0.2 1,761,807 - +0.2 1,761,874 - Dsui_1675 0.45 -2.3 1,761,885 - Dsui_1675 0.49 -1.8 1,761,924 - Dsui_1675 0.61 +0.2 1,761,932 + Dsui_1675 0.63 -0.8 1,762,048 - +0.2 1,762,089 + -0.8 1,762,110 + -1.8 1,762,129 + -0.8 1,762,164 - -2.1 1,762,257 - Dsui_1676 0.25 +0.3 1,762,268 + +0.3 1,762,401 + -0.7 1,762,409 - Dsui_1676 0.56 +0.3 1,762,416 + Dsui_1676 0.58 -1.7 1,762,417 - Dsui_1676 0.58 -1.7 1,762,424 - Dsui_1676 0.59 -1.7 1,762,524 + Dsui_1676 0.80 -1.3 1,762,524 + +0.3 1,762,532 - Dsui_1676 0.81 -1.3 1,762,557 + +0.3 1,762,560 - Dsui_1676 0.87 -0.7 1,762,565 - Dsui_1676 0.88 -0.7 1,762,589 + +0.3 1,762,705 - +0.3 1,762,721 - +0.3 1,762,836 + Dsui_1677 0.26 -2.9 1,763,031 + Dsui_1677 0.58 -1.3
Or see this region's nucleotide sequence