Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1605 and Dsui_1606 are separated by 253 nucleotides Dsui_1606 and Dsui_1607 are separated by 102 nucleotides
Dsui_1605: Dsui_1605 - acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II, at 1,687,916 to 1,689,505
_1605
Dsui_1606: Dsui_1606 - periplasmic serine protease, Do/DeqQ family, at 1,689,759 to 1,691,252
_1606
Dsui_1607: Dsui_1607 - putative membrane-associated protein, at 1,691,355 to 1,692,332
_1607
Position (kb)
1689
1690
1691
1692 Strain fitness (log2 ratio)
-2
-1
0
1 at 1688.820 kb on + strand at 1688.865 kb on - strand at 1688.917 kb on + strand at 1689.044 kb on + strand, within Dsui_1605 at 1689.198 kb on + strand at 1689.214 kb on - strand at 1689.371 kb on - strand at 1689.483 kb on - strand at 1689.494 kb on + strand at 1689.616 kb on - strand at 1689.720 kb on + strand at 1689.720 kb on + strand at 1689.730 kb on - strand at 1689.735 kb on - strand at 1689.749 kb on + strand at 1689.862 kb on - strand at 1689.914 kb on + strand, within Dsui_1606 at 1690.056 kb on + strand, within Dsui_1606 at 1690.298 kb on - strand at 1690.394 kb on - strand at 1690.434 kb on - strand, within Dsui_1606 at 1690.711 kb on + strand, within Dsui_1606 at 1690.837 kb on + strand, within Dsui_1606 at 1690.856 kb on + strand, within Dsui_1606 at 1690.997 kb on + strand, within Dsui_1606 at 1691.048 kb on - strand at 1691.208 kb on - strand at 1691.262 kb on + strand at 1691.270 kb on - strand at 1691.324 kb on + strand at 1691.687 kb on + strand, within Dsui_1607 at 1691.783 kb on - strand, within Dsui_1607 at 1691.936 kb on + strand, within Dsui_1607 at 1691.962 kb on - strand, within Dsui_1607
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 1,688,820 + +0.2 1,688,865 - +0.2 1,688,917 + +0.2 1,689,044 + Dsui_1605 0.71 -2.3 1,689,198 + +0.2 1,689,214 - -0.8 1,689,371 - +0.2 1,689,483 - -1.3 1,689,494 + -2.6 1,689,616 - +0.3 1,689,720 + +0.7 1,689,720 + -0.0 1,689,730 - -1.7 1,689,735 - +0.3 1,689,749 + -0.4 1,689,862 - +0.3 1,689,914 + Dsui_1606 0.10 +0.3 1,690,056 + Dsui_1606 0.20 +0.4 1,690,298 - -0.7 1,690,394 - -0.7 1,690,434 - Dsui_1606 0.45 -2.5 1,690,711 + Dsui_1606 0.64 -0.2 1,690,837 + Dsui_1606 0.72 -0.4 1,690,856 + Dsui_1606 0.73 +0.1 1,690,997 + Dsui_1606 0.83 -0.4 1,691,048 - +0.3 1,691,208 - -1.3 1,691,262 + +0.5 1,691,270 - +0.2 1,691,324 + -1.7 1,691,687 + Dsui_1607 0.34 -1.3 1,691,783 - Dsui_1607 0.44 +0.2 1,691,936 + Dsui_1607 0.59 -1.5 1,691,962 - Dsui_1607 0.62 -0.8
Or see this region's nucleotide sequence