Strain Fitness in Dechlorosoma suillum PS around Dsui_1602

Experiment: ALP with perchlorate 3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1600 and Dsui_1601 are separated by 27 nucleotidesDsui_1601 and Dsui_1602 are separated by 142 nucleotidesDsui_1602 and Dsui_1603 are separated by 198 nucleotides Dsui_1600: Dsui_1600 - putative enzyme of heme biosynthesis, at 1,680,831 to 1,681,916 _1600 Dsui_1601: Dsui_1601 - uroporphyrinogen-III synthase, at 1,681,944 to 1,682,711 _1601 Dsui_1602: Dsui_1602 - porphobilinogen deaminase, at 1,682,854 to 1,683,813 _1602 Dsui_1603: Dsui_1603 - phosphoenolpyruvate carboxylase, at 1,684,012 to 1,686,819 _1603 Position (kb) 1682 1683 1684Strain fitness (log2 ratio) -3 -2 -1 0 1at 1681.890 kb on - strandat 1681.919 kb on - strandat 1681.930 kb on - strandat 1682.738 kb on + strandat 1682.762 kb on + strandat 1682.774 kb on - strandat 1682.779 kb on + strandat 1682.846 kb on - strandat 1682.859 kb on + strandat 1682.865 kb on - strandat 1682.869 kb on + strandat 1682.872 kb on - strandat 1682.872 kb on - strandat 1682.872 kb on - strandat 1684.246 kb on + strandat 1684.262 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM
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1,681,890 - -1.5
1,681,919 - -1.0
1,681,930 - -1.5
1,682,738 + +0.2
1,682,762 + +0.2
1,682,774 - -0.3
1,682,779 + -1.4
1,682,846 - -0.3
1,682,859 + -0.8
1,682,865 - -3.6
1,682,869 + +0.2
1,682,872 - -0.3
1,682,872 - -0.2
1,682,872 - -0.2
1,684,246 + -0.8
1,684,262 + -0.8

Or see this region's nucleotide sequence