Strain Fitness in Dechlorosoma suillum PS around Dsui_1557

Experiment: ALP with perchlorate 3 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_1556 and Dsui_1557 are separated by 199 nucleotidesDsui_1557 and Dsui_1558 are separated by 55 nucleotides Dsui_1556: Dsui_1556 - RND family efflux transporter, MFP subunit, at 1,622,794 to 1,623,990 _1556 Dsui_1557: Dsui_1557 - 3-phosphoglycerate kinase, at 1,624,190 to 1,625,374 _1557 Dsui_1558: Dsui_1558 - glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase, at 1,625,430 to 1,626,476 _1558 Position (kb) 1624 1625 1626Strain fitness (log2 ratio) -2 -1 0 1at 1623.348 kb on + strandat 1623.507 kb on + strand, within Dsui_1556at 1623.551 kb on - strand, within Dsui_1556at 1623.605 kb on + strand, within Dsui_1556at 1623.611 kb on + strand, within Dsui_1556at 1623.652 kb on - strand, within Dsui_1556at 1623.679 kb on - strand, within Dsui_1556at 1623.709 kb on + strand, within Dsui_1556at 1624.103 kb on + strandat 1625.435 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM
remove
1,623,348 + -0.7
1,623,507 + Dsui_1556 0.60 +0.3
1,623,551 - Dsui_1556 0.63 -0.2
1,623,605 + Dsui_1556 0.68 +0.3
1,623,611 + Dsui_1556 0.68 -1.7
1,623,652 - Dsui_1556 0.72 -0.7
1,623,679 - Dsui_1556 0.74 -0.5
1,623,709 + Dsui_1556 0.76 -2.5
1,624,103 + +0.3
1,625,435 + +0.3

Or see this region's nucleotide sequence