Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1525 and Dsui_1526 are separated by 73 nucleotides Dsui_1526 and Dsui_1527 are separated by 635 nucleotides Dsui_1527 and Dsui_1528 are separated by 165 nucleotides
Dsui_1525: Dsui_1525 - sulfate/thiosulfate-binding protein, at 1,587,583 to 1,588,590
_1525
Dsui_1526: Dsui_1526 - hypothetical protein, at 1,588,664 to 1,588,861
_1526
Dsui_1527: Dsui_1527 - hypothetical protein, at 1,589,497 to 1,589,706
_1527
Dsui_1528: Dsui_1528 - signal transduction histidine kinase, at 1,589,872 to 1,591,311
_1528
Position (kb)
1589
1590 Strain fitness (log2 ratio)
-2
-1
0
1 at 1588.507 kb on - strand at 1588.519 kb on + strand at 1588.519 kb on + strand at 1588.536 kb on - strand at 1588.571 kb on - strand at 1588.572 kb on + strand at 1588.572 kb on + strand at 1588.655 kb on + strand at 1588.726 kb on + strand, within Dsui_1526 at 1588.726 kb on + strand at 1588.734 kb on - strand, within Dsui_1526 at 1588.754 kb on + strand, within Dsui_1526 at 1588.782 kb on - strand, within Dsui_1526 at 1588.803 kb on - strand, within Dsui_1526 at 1588.803 kb on - strand, within Dsui_1526 at 1588.831 kb on + strand, within Dsui_1526 at 1588.870 kb on + strand at 1588.892 kb on - strand at 1588.922 kb on - strand at 1588.922 kb on - strand at 1589.161 kb on - strand at 1589.163 kb on + strand at 1589.164 kb on - strand at 1589.203 kb on + strand at 1589.218 kb on - strand at 1589.275 kb on - strand at 1589.877 kb on - strand at 1589.878 kb on + strand at 1589.879 kb on + strand at 1589.879 kb on + strand at 1589.947 kb on - strand at 1589.954 kb on - strand at 1590.111 kb on + strand, within Dsui_1528 at 1590.184 kb on - strand, within Dsui_1528 at 1590.234 kb on + strand, within Dsui_1528 at 1590.329 kb on - strand, within Dsui_1528 at 1590.382 kb on + strand, within Dsui_1528 at 1590.400 kb on - strand, within Dsui_1528 at 1590.506 kb on - strand, within Dsui_1528 at 1590.506 kb on - strand, within Dsui_1528 at 1590.533 kb on + strand, within Dsui_1528
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 1,588,507 - +0.3 1,588,519 + +0.1 1,588,519 + -0.3 1,588,536 - -1.5 1,588,571 - +0.3 1,588,572 + -0.1 1,588,572 + -1.7 1,588,655 + +0.3 1,588,726 + Dsui_1526 0.31 -0.7 1,588,726 + +0.3 1,588,734 - Dsui_1526 0.35 -0.1 1,588,754 + Dsui_1526 0.45 +0.3 1,588,782 - Dsui_1526 0.60 +0.0 1,588,803 - Dsui_1526 0.70 -0.2 1,588,803 - Dsui_1526 0.70 -0.1 1,588,831 + Dsui_1526 0.84 -0.7 1,588,870 + +0.3 1,588,892 - -0.3 1,588,922 - -0.3 1,588,922 - -0.2 1,589,161 - -2.5 1,589,163 + -0.7 1,589,164 - +0.3 1,589,203 + -0.7 1,589,218 - -0.7 1,589,275 - -0.7 1,589,877 - -0.1 1,589,878 + -0.7 1,589,879 + -1.3 1,589,879 + -0.7 1,589,947 - -0.1 1,589,954 - -0.6 1,590,111 + Dsui_1528 0.17 -1.3 1,590,184 - Dsui_1528 0.22 -0.3 1,590,234 + Dsui_1528 0.25 -0.7 1,590,329 - Dsui_1528 0.32 -1.6 1,590,382 + Dsui_1528 0.35 -0.7 1,590,400 - Dsui_1528 0.37 -1.7 1,590,506 - Dsui_1528 0.44 -0.6 1,590,506 - Dsui_1528 0.44 -0.3 1,590,533 + Dsui_1528 0.46 -1.7
Or see this region's nucleotide sequence