Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1439 and Dsui_1440 are separated by 4 nucleotides Dsui_1440 and Dsui_1441 are separated by 157 nucleotides Dsui_1441 and Dsui_1442 are separated by 154 nucleotides
Dsui_1439: Dsui_1439 - methyl-accepting chemotaxis protein, at 1,493,420 to 1,494,691
_1439
Dsui_1440: Dsui_1440 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 1,494,696 to 1,495,061
_1440
Dsui_1441: Dsui_1441 - phenylacetate-CoA ligase, at 1,495,219 to 1,496,523
_1441
Dsui_1442: Dsui_1442 - putative efflux protein, MATE family, at 1,496,678 to 1,498,042
_1442
Position (kb)
1495
1496
1497 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1494.328 kb on + strand, within Dsui_1439 at 1494.411 kb on + strand, within Dsui_1439 at 1494.450 kb on - strand, within Dsui_1439 at 1494.552 kb on + strand, within Dsui_1439 at 1494.557 kb on + strand, within Dsui_1439 at 1494.880 kb on - strand, within Dsui_1440 at 1494.896 kb on + strand, within Dsui_1440 at 1494.902 kb on + strand, within Dsui_1440 at 1494.907 kb on + strand, within Dsui_1440 at 1494.917 kb on + strand, within Dsui_1440 at 1494.931 kb on - strand, within Dsui_1440 at 1494.943 kb on - strand, within Dsui_1440 at 1495.027 kb on - strand at 1495.054 kb on - strand at 1495.104 kb on + strand at 1495.110 kb on + strand at 1495.155 kb on - strand at 1495.167 kb on - strand at 1495.230 kb on - strand at 1495.244 kb on + strand at 1495.297 kb on - strand at 1495.319 kb on + strand at 1495.394 kb on + strand, within Dsui_1441 at 1495.587 kb on - strand, within Dsui_1441 at 1495.816 kb on - strand, within Dsui_1441 at 1495.868 kb on + strand at 1495.912 kb on - strand, within Dsui_1441 at 1495.956 kb on + strand at 1495.957 kb on - strand, within Dsui_1441 at 1495.960 kb on + strand at 1496.051 kb on + strand at 1496.056 kb on + strand, within Dsui_1441 at 1496.077 kb on - strand, within Dsui_1441 at 1496.168 kb on + strand at 1496.331 kb on - strand, within Dsui_1441 at 1496.346 kb on + strand, within Dsui_1441 at 1496.435 kb on + strand at 1496.572 kb on + strand at 1496.667 kb on - strand at 1496.799 kb on + strand at 1497.000 kb on - strand, within Dsui_1442 at 1497.035 kb on - strand, within Dsui_1442 at 1497.113 kb on - strand at 1497.130 kb on + strand, within Dsui_1442 at 1497.135 kb on - strand at 1497.159 kb on - strand at 1497.430 kb on + strand, within Dsui_1442 at 1497.465 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 1,494,328 + Dsui_1439 0.71 -2.0 1,494,411 + Dsui_1439 0.78 -0.8 1,494,450 - Dsui_1439 0.81 -0.2 1,494,552 + Dsui_1439 0.89 +0.2 1,494,557 + Dsui_1439 0.89 -0.8 1,494,880 - Dsui_1440 0.50 +0.2 1,494,896 + Dsui_1440 0.55 -1.8 1,494,902 + Dsui_1440 0.56 -1.4 1,494,907 + Dsui_1440 0.58 -0.8 1,494,917 + Dsui_1440 0.60 +0.2 1,494,931 - Dsui_1440 0.64 -0.1 1,494,943 - Dsui_1440 0.67 -0.6 1,495,027 - -0.0 1,495,054 - -0.3 1,495,104 + -1.4 1,495,110 + -0.8 1,495,155 - +0.2 1,495,167 - +0.2 1,495,230 - -0.5 1,495,244 + -0.8 1,495,297 - -2.6 1,495,319 + -1.8 1,495,394 + Dsui_1441 0.13 -0.8 1,495,587 - Dsui_1441 0.28 -1.0 1,495,816 - Dsui_1441 0.46 +0.4 1,495,868 + +0.2 1,495,912 - Dsui_1441 0.53 -0.5 1,495,956 + +0.2 1,495,957 - Dsui_1441 0.57 +0.2 1,495,960 + +0.2 1,496,051 + +0.2 1,496,056 + Dsui_1441 0.64 -1.4 1,496,077 - Dsui_1441 0.66 -1.6 1,496,168 + +0.2 1,496,331 - Dsui_1441 0.85 -0.9 1,496,346 + Dsui_1441 0.86 -0.8 1,496,435 + +0.2 1,496,572 + -3.2 1,496,667 - +0.2 1,496,799 + +0.2 1,497,000 - Dsui_1442 0.24 -1.8 1,497,035 - Dsui_1442 0.26 -1.8 1,497,113 - +0.2 1,497,130 + Dsui_1442 0.33 -0.8 1,497,135 - -0.8 1,497,159 - -0.8 1,497,430 + Dsui_1442 0.55 -2.1 1,497,465 + +0.2
Or see this region's nucleotide sequence