Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1386 and Dsui_1387 are separated by 88 nucleotides Dsui_1387 and Dsui_1388 overlap by 4 nucleotides Dsui_1388 and Dsui_1389 are separated by 3 nucleotides Dsui_1389 and Dsui_1390 are separated by 18 nucleotides
Dsui_1386: Dsui_1386 - family 3 adenylate cyclase, at 1,442,701 to 1,444,017
_1386
Dsui_1387: Dsui_1387 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 1,444,106 to 1,444,822
_1387
Dsui_1388: Dsui_1388 - hypothetical protein, at 1,444,819 to 1,446,975
_1388
Dsui_1389: Dsui_1389 - hypothetical protein, at 1,446,979 to 1,447,482
_1389
Dsui_1390: Dsui_1390 - hypothetical protein, at 1,447,501 to 1,448,100
_1390
Position (kb)
1444
1445
1446
1447 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1443.889 kb on + strand at 1443.891 kb on + strand at 1443.902 kb on + strand at 1443.915 kb on - strand at 1444.050 kb on + strand at 1444.338 kb on - strand, within Dsui_1387 at 1444.350 kb on - strand, within Dsui_1387 at 1444.378 kb on + strand at 1444.428 kb on - strand, within Dsui_1387 at 1444.501 kb on + strand, within Dsui_1387 at 1444.501 kb on + strand at 1444.509 kb on - strand, within Dsui_1387 at 1444.509 kb on - strand, within Dsui_1387 at 1444.585 kb on - strand, within Dsui_1387 at 1444.646 kb on + strand, within Dsui_1387 at 1444.794 kb on - strand at 1444.818 kb on - strand at 1444.862 kb on - strand at 1444.950 kb on + strand at 1445.063 kb on + strand, within Dsui_1388 at 1445.147 kb on - strand at 1445.246 kb on + strand, within Dsui_1388 at 1445.259 kb on - strand, within Dsui_1388 at 1445.698 kb on + strand at 1445.709 kb on + strand at 1445.717 kb on - strand at 1445.790 kb on + strand at 1445.921 kb on - strand at 1445.963 kb on - strand, within Dsui_1388 at 1446.007 kb on + strand, within Dsui_1388 at 1446.007 kb on + strand at 1446.010 kb on - strand at 1446.089 kb on - strand at 1446.193 kb on + strand at 1446.193 kb on + strand at 1446.327 kb on + strand at 1446.540 kb on + strand, within Dsui_1388 at 1446.540 kb on + strand, within Dsui_1388 at 1446.556 kb on + strand, within Dsui_1388 at 1446.577 kb on - strand at 1446.580 kb on + strand, within Dsui_1388 at 1446.793 kb on + strand at 1447.089 kb on + strand at 1447.130 kb on - strand at 1447.277 kb on - strand at 1447.293 kb on + strand, within Dsui_1389 at 1447.299 kb on - strand, within Dsui_1389 at 1447.325 kb on + strand at 1447.450 kb on + strand at 1447.536 kb on - strand at 1447.550 kb on + strand at 1447.558 kb on - strand at 1447.558 kb on - strand at 1447.734 kb on - strand, within Dsui_1390 at 1447.735 kb on + strand at 1447.837 kb on + strand at 1447.897 kb on - strand, within Dsui_1390 at 1447.897 kb on - strand at 1447.926 kb on + strand at 1447.937 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 1,443,889 + -3.7 1,443,891 + +0.2 1,443,902 + -1.8 1,443,915 - -0.1 1,444,050 + +0.2 1,444,338 - Dsui_1387 0.32 +0.2 1,444,350 - Dsui_1387 0.34 +0.2 1,444,378 + -0.8 1,444,428 - Dsui_1387 0.45 -3.0 1,444,501 + Dsui_1387 0.55 -0.8 1,444,501 + +0.2 1,444,509 - Dsui_1387 0.56 +0.2 1,444,509 - Dsui_1387 0.56 +0.2 1,444,585 - Dsui_1387 0.67 -1.8 1,444,646 + Dsui_1387 0.75 +0.2 1,444,794 - -0.8 1,444,818 - -3.0 1,444,862 - -1.4 1,444,950 + -1.4 1,445,063 + Dsui_1388 0.11 -2.3 1,445,147 - -0.8 1,445,246 + Dsui_1388 0.20 +0.2 1,445,259 - Dsui_1388 0.20 +0.2 1,445,698 + +0.2 1,445,709 + +0.2 1,445,717 - +0.2 1,445,790 + +0.2 1,445,921 - +0.2 1,445,963 - Dsui_1388 0.53 -1.4 1,446,007 + Dsui_1388 0.55 +0.2 1,446,007 + -0.8 1,446,010 - +0.2 1,446,089 - +0.2 1,446,193 + +0.2 1,446,193 + -1.4 1,446,327 + +0.2 1,446,540 + Dsui_1388 0.80 -1.4 1,446,540 + Dsui_1388 0.80 -1.4 1,446,556 + Dsui_1388 0.81 -1.8 1,446,577 - +0.2 1,446,580 + Dsui_1388 0.82 +0.2 1,446,793 + -1.8 1,447,089 + -1.4 1,447,130 - -2.2 1,447,277 - +0.2 1,447,293 + Dsui_1389 0.62 -2.2 1,447,299 - Dsui_1389 0.63 -0.8 1,447,325 + -0.8 1,447,450 + -0.8 1,447,536 - -0.8 1,447,550 + -0.8 1,447,558 - -3.2 1,447,558 - +0.2 1,447,734 - Dsui_1390 0.39 -1.4 1,447,735 + +0.2 1,447,837 + +0.2 1,447,897 - Dsui_1390 0.66 -2.2 1,447,897 - -1.8 1,447,926 + +0.2 1,447,937 + -1.4
Or see this region's nucleotide sequence