Strain Fitness in Dechlorosoma suillum PS around Dsui_1217

Experiment: ALP with perchlorate 3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1215 and Dsui_1216 are separated by 15 nucleotidesDsui_1216 and Dsui_1217 are separated by 64 nucleotidesDsui_1217 and Dsui_1218 are separated by 11 nucleotidesDsui_1218 and Dsui_1219 are separated by 56 nucleotides Dsui_1215: Dsui_1215 - FolB domain protein, at 1,272,260 to 1,272,613 _1215 Dsui_1216: Dsui_1216 - ybaK/ebsC protein, at 1,272,629 to 1,273,135 _1216 Dsui_1217: Dsui_1217 - tyrosine recombinase XerD, at 1,273,200 to 1,274,123 _1217 Dsui_1218: Dsui_1218 - O-6-methylguanine DNA methyltransferase, at 1,274,135 to 1,274,623 _1218 Dsui_1219: Dsui_1219 - aspartyl-tRNA synthetase, at 1,274,680 to 1,275,261 _1219 Position (kb) 1273 1274 1275Strain fitness (log2 ratio) -3 -2 -1 0 1at 1272.212 kb on - strandat 1272.670 kb on + strandat 1272.671 kb on + strandat 1272.687 kb on - strand, within Dsui_1216at 1272.742 kb on + strand, within Dsui_1216at 1272.779 kb on - strand, within Dsui_1216at 1272.819 kb on - strand, within Dsui_1216at 1272.927 kb on + strand, within Dsui_1216at 1272.994 kb on + strand, within Dsui_1216at 1273.035 kb on - strand, within Dsui_1216at 1273.044 kb on + strand, within Dsui_1216at 1273.052 kb on - strand, within Dsui_1216at 1273.090 kb on - strandat 1273.160 kb on - strandat 1273.258 kb on + strandat 1273.423 kb on + strand, within Dsui_1217at 1273.533 kb on - strand, within Dsui_1217at 1273.536 kb on + strand, within Dsui_1217at 1273.558 kb on + strand, within Dsui_1217at 1273.571 kb on + strand, within Dsui_1217at 1273.636 kb on - strand, within Dsui_1217at 1273.695 kb on - strand, within Dsui_1217at 1273.770 kb on - strand, within Dsui_1217at 1273.787 kb on - strand, within Dsui_1217at 1273.864 kb on + strandat 1274.074 kb on + strandat 1274.315 kb on - strand, within Dsui_1218at 1274.589 kb on + strandat 1274.589 kb on + strandat 1274.670 kb on + strandat 1274.678 kb on - strandat 1274.681 kb on + strandat 1274.725 kb on - strandat 1274.735 kb on - strandat 1274.762 kb on - strand, within Dsui_1219at 1274.900 kb on + strand, within Dsui_1219at 1274.996 kb on + strand, within Dsui_1219at 1275.076 kb on + strand, within Dsui_1219at 1275.089 kb on + strand, within Dsui_1219at 1275.089 kb on + strand, within Dsui_1219

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM
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1,272,212 - -1.8
1,272,670 + -0.2
1,272,671 + -0.4
1,272,687 - Dsui_1216 0.11 -0.8
1,272,742 + Dsui_1216 0.22 -0.4
1,272,779 - Dsui_1216 0.30 -0.8
1,272,819 - Dsui_1216 0.37 -0.2
1,272,927 + Dsui_1216 0.59 +0.2
1,272,994 + Dsui_1216 0.72 -1.7
1,273,035 - Dsui_1216 0.80 -1.8
1,273,044 + Dsui_1216 0.82 -0.8
1,273,052 - Dsui_1216 0.83 -1.4
1,273,090 - -0.7
1,273,160 - +0.1
1,273,258 + -1.4
1,273,423 + Dsui_1217 0.24 -0.8
1,273,533 - Dsui_1217 0.36 +0.2
1,273,536 + Dsui_1217 0.36 -2.8
1,273,558 + Dsui_1217 0.39 -1.4
1,273,571 + Dsui_1217 0.40 -0.8
1,273,636 - Dsui_1217 0.47 -0.1
1,273,695 - Dsui_1217 0.54 +0.2
1,273,770 - Dsui_1217 0.62 -0.8
1,273,787 - Dsui_1217 0.64 -1.8
1,273,864 + -1.4
1,274,074 + -1.4
1,274,315 - Dsui_1218 0.37 +0.8
1,274,589 + -1.4
1,274,589 + -0.8
1,274,670 + -0.8
1,274,678 - -0.5
1,274,681 + -1.4
1,274,725 - -0.3
1,274,735 - -0.1
1,274,762 - Dsui_1219 0.14 -0.1
1,274,900 + Dsui_1219 0.38 -2.0
1,274,996 + Dsui_1219 0.54 -0.4
1,275,076 + Dsui_1219 0.68 +0.2
1,275,089 + Dsui_1219 0.70 +0.2
1,275,089 + Dsui_1219 0.70 +0.2

Or see this region's nucleotide sequence