Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0977 and Dsui_0978 are separated by 87 nucleotides Dsui_0978 and Dsui_0979 are separated by 116 nucleotides Dsui_0979 and Dsui_0980 are separated by 132 nucleotides
Dsui_0977: Dsui_0977 - acyl-CoA dehydrogenase, at 1,003,640 to 1,004,776
_0977
Dsui_0978: Dsui_0978 - 2-hydroxychromene-2-carboxylate isomerase, at 1,004,864 to 1,005,466
_0978
Dsui_0979: Dsui_0979 - TIGR00730 family protein, at 1,005,583 to 1,006,167
_0979
Dsui_0980: Dsui_0980 - acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta), at 1,006,300 to 1,007,907
_0980
Position (kb)
1004
1005
1006 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1003.890 kb on + strand, within Dsui_0977 at 1003.933 kb on - strand, within Dsui_0977 at 1004.088 kb on + strand, within Dsui_0977 at 1004.154 kb on + strand, within Dsui_0977 at 1004.171 kb on + strand, within Dsui_0977 at 1004.189 kb on + strand, within Dsui_0977 at 1004.233 kb on + strand, within Dsui_0977 at 1004.562 kb on + strand, within Dsui_0977 at 1004.568 kb on + strand, within Dsui_0977 at 1004.641 kb on + strand, within Dsui_0977 at 1004.657 kb on + strand, within Dsui_0977 at 1004.762 kb on - strand at 1004.778 kb on - strand at 1004.829 kb on + strand at 1004.829 kb on + strand at 1004.996 kb on - strand, within Dsui_0978 at 1005.128 kb on - strand, within Dsui_0978 at 1005.178 kb on + strand, within Dsui_0978 at 1005.222 kb on - strand, within Dsui_0978 at 1005.414 kb on - strand at 1005.540 kb on + strand at 1005.670 kb on + strand, within Dsui_0979 at 1005.848 kb on + strand, within Dsui_0979 at 1005.939 kb on - strand, within Dsui_0979 at 1006.064 kb on + strand, within Dsui_0979 at 1006.068 kb on + strand, within Dsui_0979 at 1006.106 kb on - strand, within Dsui_0979 at 1006.416 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 1,003,890 + Dsui_0977 0.22 -1.9 1,003,933 - Dsui_0977 0.26 +0.4 1,004,088 + Dsui_0977 0.39 -0.6 1,004,154 + Dsui_0977 0.45 +2.0 1,004,171 + Dsui_0977 0.47 +0.1 1,004,189 + Dsui_0977 0.48 -0.2 1,004,233 + Dsui_0977 0.52 +0.4 1,004,562 + Dsui_0977 0.81 +0.8 1,004,568 + Dsui_0977 0.82 -0.6 1,004,641 + Dsui_0977 0.88 -1.6 1,004,657 + Dsui_0977 0.89 +0.7 1,004,762 - -0.6 1,004,778 - +0.4 1,004,829 + -0.3 1,004,829 + +1.4 1,004,996 - Dsui_0978 0.22 +0.4 1,005,128 - Dsui_0978 0.44 +0.4 1,005,178 + Dsui_0978 0.52 -2.8 1,005,222 - Dsui_0978 0.59 -2.6 1,005,414 - -3.1 1,005,540 + -0.2 1,005,670 + Dsui_0979 0.15 +0.2 1,005,848 + Dsui_0979 0.45 -0.1 1,005,939 - Dsui_0979 0.61 +0.4 1,006,064 + Dsui_0979 0.82 -0.2 1,006,068 + Dsui_0979 0.83 +0.6 1,006,106 - Dsui_0979 0.89 +0.4 1,006,416 - -0.6
Or see this region's nucleotide sequence