Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0940 and Dsui_0941 are separated by 152 nucleotides Dsui_0941 and Dsui_0942 are separated by 153 nucleotides
Dsui_0940: Dsui_0940 - Nif-specific regulatory protein, at 968,329 to 970,062
_0940
Dsui_0941: Dsui_0941 - nitrogenase-associated protein, at 970,215 to 970,643
_0941
Dsui_0942: Dsui_0942 - hypothetical protein, at 970,797 to 971,366
_0942
Position (kb) 970
971 Strain fitness (log2 ratio) -2
-1
0
1
2 at 969.235 kb on - strand, within Dsui_0940 at 969.272 kb on - strand, within Dsui_0940 at 969.281 kb on + strand, within Dsui_0940 at 969.296 kb on + strand at 969.297 kb on - strand, within Dsui_0940 at 969.314 kb on - strand, within Dsui_0940 at 969.396 kb on - strand, within Dsui_0940 at 969.416 kb on + strand, within Dsui_0940 at 969.454 kb on - strand at 969.592 kb on + strand, within Dsui_0940 at 969.602 kb on - strand, within Dsui_0940 at 969.683 kb on + strand, within Dsui_0940 at 969.691 kb on - strand, within Dsui_0940 at 969.691 kb on - strand, within Dsui_0940 at 969.978 kb on - strand at 969.983 kb on - strand at 969.998 kb on + strand at 970.121 kb on - strand at 970.337 kb on + strand at 970.414 kb on + strand, within Dsui_0941 at 970.434 kb on - strand at 970.469 kb on + strand, within Dsui_0941 at 970.581 kb on - strand, within Dsui_0941 at 970.853 kb on - strand at 970.954 kb on + strand, within Dsui_0942 at 970.962 kb on - strand, within Dsui_0942 at 970.977 kb on + strand, within Dsui_0942 at 971.009 kb on + strand, within Dsui_0942 at 971.038 kb on + strand at 971.104 kb on - strand, within Dsui_0942 at 971.214 kb on - strand, within Dsui_0942 at 971.284 kb on + strand, within Dsui_0942 at 971.635 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 969,235 - Dsui_0940 0.52 -2.2 969,272 - Dsui_0940 0.54 -1.6 969,281 + Dsui_0940 0.55 +0.4 969,296 + +0.4 969,297 - Dsui_0940 0.56 -0.6 969,314 - Dsui_0940 0.57 -0.6 969,396 - Dsui_0940 0.62 -0.6 969,416 + Dsui_0940 0.63 -2.0 969,454 - +0.4 969,592 + Dsui_0940 0.73 -0.6 969,602 - Dsui_0940 0.73 -1.2 969,683 + Dsui_0940 0.78 -1.6 969,691 - Dsui_0940 0.79 -0.6 969,691 - Dsui_0940 0.79 -2.0 969,978 - -1.6 969,983 - -0.6 969,998 + -2.0 970,121 - -0.6 970,337 + +0.4 970,414 + Dsui_0941 0.46 -1.2 970,434 - -1.2 970,469 + Dsui_0941 0.59 +0.4 970,581 - Dsui_0941 0.85 -0.6 970,853 - +0.4 970,954 + Dsui_0942 0.28 -0.6 970,962 - Dsui_0942 0.29 +0.4 970,977 + Dsui_0942 0.32 +2.0 971,009 + Dsui_0942 0.37 -2.0 971,038 + +0.4 971,104 - Dsui_0942 0.54 +0.4 971,214 - Dsui_0942 0.73 +0.4 971,284 + Dsui_0942 0.85 -0.6 971,635 - -1.6
Or see this region's nucleotide sequence