Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0934 and Dsui_0935 are separated by 107 nucleotides Dsui_0935 and Dsui_0936 are separated by 129 nucleotides Dsui_0936 and Dsui_0937 are separated by 99 nucleotides Dsui_0937 and Dsui_0938 are separated by 156 nucleotides
Dsui_0934: Dsui_0934 - hypothetical protein, at 963,566 to 963,862
_0934
Dsui_0935: Dsui_0935 - cytochrome c5, at 963,970 to 964,413
_0935
Dsui_0936: Dsui_0936 - tRNA-Arg, at 964,543 to 964,619
_0936
Dsui_0937: Dsui_0937 - hypothetical protein, at 964,719 to 965,039
_0937
Dsui_0938: Dsui_0938 - HD-GYP domain-containing protein, at 965,196 to 966,275
_0938
Position (kb) 964
965
966 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 963.952 kb on + strand at 963.971 kb on + strand at 964.013 kb on - strand at 964.026 kb on + strand, within Dsui_0935 at 964.077 kb on + strand, within Dsui_0935 at 964.091 kb on - strand, within Dsui_0935 at 964.132 kb on + strand, within Dsui_0935 at 964.316 kb on + strand at 964.404 kb on + strand at 964.415 kb on - strand at 964.437 kb on + strand at 964.449 kb on - strand at 964.638 kb on + strand at 964.646 kb on - strand at 964.647 kb on - strand at 964.668 kb on + strand at 964.768 kb on + strand, within Dsui_0937 at 964.779 kb on + strand, within Dsui_0937 at 964.788 kb on - strand, within Dsui_0937 at 964.838 kb on + strand at 964.908 kb on + strand, within Dsui_0937 at 964.983 kb on - strand, within Dsui_0937 at 964.994 kb on - strand, within Dsui_0937 at 964.994 kb on - strand, within Dsui_0937 at 965.026 kb on - strand at 965.049 kb on - strand at 965.056 kb on + strand at 965.074 kb on - strand at 965.147 kb on + strand at 965.155 kb on - strand at 965.178 kb on + strand at 965.187 kb on - strand at 965.194 kb on + strand at 965.320 kb on - strand at 965.400 kb on - strand, within Dsui_0938 at 965.404 kb on + strand, within Dsui_0938 at 965.459 kb on + strand, within Dsui_0938 at 965.482 kb on - strand, within Dsui_0938 at 965.486 kb on - strand, within Dsui_0938 at 965.682 kb on + strand, within Dsui_0938 at 965.957 kb on + strand, within Dsui_0938 at 966.020 kb on - strand, within Dsui_0938
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 963,952 + -0.9 963,971 + -0.6 964,013 - -0.1 964,026 + Dsui_0935 0.13 -1.2 964,077 + Dsui_0935 0.24 -0.6 964,091 - Dsui_0935 0.27 +0.0 964,132 + Dsui_0935 0.36 +1.4 964,316 + -0.6 964,404 + -1.2 964,415 - +0.2 964,437 + -0.2 964,449 - +0.2 964,638 + +0.1 964,646 - -1.6 964,647 - -0.6 964,668 + -0.1 964,768 + Dsui_0937 0.15 -0.6 964,779 + Dsui_0937 0.19 -1.2 964,788 - Dsui_0937 0.21 +0.3 964,838 + -0.6 964,908 + Dsui_0937 0.59 -0.8 964,983 - Dsui_0937 0.82 -0.1 964,994 - Dsui_0937 0.86 +0.2 964,994 - Dsui_0937 0.86 -0.5 965,026 - -0.6 965,049 - -0.1 965,056 + +0.4 965,074 - -0.4 965,147 + +0.4 965,155 - -2.2 965,178 + -0.5 965,187 - +0.4 965,194 + +0.3 965,320 - +0.4 965,400 - Dsui_0938 0.19 +0.4 965,404 + Dsui_0938 0.19 -0.2 965,459 + Dsui_0938 0.24 +0.2 965,482 - Dsui_0938 0.26 -0.6 965,486 - Dsui_0938 0.27 -1.6 965,682 + Dsui_0938 0.45 +0.1 965,957 + Dsui_0938 0.70 +0.1 966,020 - Dsui_0938 0.76 -4.7
Or see this region's nucleotide sequence