Strain Fitness in Dechlorosoma suillum PS around Dsui_0930

Experiment: ALP with perchlorate 3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0929 and Dsui_0930 are separated by 277 nucleotidesDsui_0930 and Dsui_0931 are separated by 168 nucleotidesDsui_0931 and Dsui_0932 are separated by 15 nucleotides Dsui_0929: Dsui_0929 - Zn-dependent hydrolase, glyoxylase, at 957,454 to 958,170 _0929 Dsui_0930: Dsui_0930 - transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains, at 958,448 to 959,797 _0930 Dsui_0931: Dsui_0931 - thiol-disulfide isomerase-like thioredoxin, at 959,966 to 960,472 _0931 Dsui_0932: Dsui_0932 - hypothetical protein, at 960,488 to 961,192 _0932 Position (kb) 958 959 960Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 957.458 kb on - strandat 957.489 kb on + strandat 957.497 kb on - strandat 957.497 kb on - strandat 957.522 kb on - strandat 957.559 kb on + strand, within Dsui_0929at 957.559 kb on + strand, within Dsui_0929at 957.595 kb on + strand, within Dsui_0929at 957.603 kb on - strand, within Dsui_0929at 957.712 kb on + strand, within Dsui_0929at 957.749 kb on - strand, within Dsui_0929at 957.792 kb on - strand, within Dsui_0929at 957.805 kb on + strand, within Dsui_0929at 957.805 kb on + strand, within Dsui_0929at 957.831 kb on + strandat 957.957 kb on + strand, within Dsui_0929at 957.963 kb on + strand, within Dsui_0929at 957.963 kb on + strand, within Dsui_0929at 957.974 kb on + strand, within Dsui_0929at 957.991 kb on + strand, within Dsui_0929at 958.078 kb on - strandat 958.123 kb on + strandat 958.206 kb on + strandat 958.468 kb on + strandat 958.477 kb on + strandat 958.485 kb on - strandat 958.636 kb on + strand, within Dsui_0930at 958.677 kb on + strand, within Dsui_0930at 958.685 kb on - strand, within Dsui_0930at 958.693 kb on + strand, within Dsui_0930at 958.788 kb on - strand, within Dsui_0930at 958.921 kb on + strand, within Dsui_0930at 959.064 kb on - strand, within Dsui_0930at 959.064 kb on - strand, within Dsui_0930at 959.185 kb on + strand, within Dsui_0930at 959.246 kb on - strand, within Dsui_0930at 959.502 kb on + strand, within Dsui_0930at 959.533 kb on + strand, within Dsui_0930at 959.537 kb on + strand, within Dsui_0930at 959.568 kb on + strand, within Dsui_0930at 959.620 kb on - strand, within Dsui_0930at 959.695 kb on - strandat 959.700 kb on - strandat 959.747 kb on - strandat 959.747 kb on - strandat 959.747 kb on - strandat 959.784 kb on - strandat 959.819 kb on + strandat 959.835 kb on + strandat 959.858 kb on + strandat 959.858 kb on + strandat 959.866 kb on - strandat 959.868 kb on + strandat 959.944 kb on - strandat 959.950 kb on + strandat 959.950 kb on + strandat 959.972 kb on - strandat 960.035 kb on + strand, within Dsui_0931at 960.090 kb on - strand, within Dsui_0931at 960.090 kb on - strand, within Dsui_0931at 960.100 kb on - strand, within Dsui_0931at 960.124 kb on + strand, within Dsui_0931at 960.169 kb on - strand, within Dsui_0931at 960.196 kb on - strand, within Dsui_0931at 960.213 kb on - strand, within Dsui_0931at 960.273 kb on - strand, within Dsui_0931at 960.349 kb on - strand, within Dsui_0931at 960.445 kb on + strandat 960.445 kb on + strandat 960.448 kb on - strandat 960.453 kb on - strandat 960.453 kb on - strandat 960.575 kb on + strand, within Dsui_0932at 960.597 kb on - strand, within Dsui_0932at 960.663 kb on - strand, within Dsui_0932at 960.711 kb on + strand, within Dsui_0932

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM
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957,458 - -1.2
957,489 + -1.6
957,497 - +0.4
957,497 - -1.2
957,522 - +0.4
957,559 + Dsui_0929 0.15 -2.0
957,559 + Dsui_0929 0.15 -1.2
957,595 + Dsui_0929 0.20 -0.6
957,603 - Dsui_0929 0.21 +0.4
957,712 + Dsui_0929 0.36 -0.6
957,749 - Dsui_0929 0.41 -0.6
957,792 - Dsui_0929 0.47 +0.4
957,805 + Dsui_0929 0.49 +0.4
957,805 + Dsui_0929 0.49 -2.8
957,831 + +0.4
957,957 + Dsui_0929 0.70 -1.6
957,963 + Dsui_0929 0.71 -2.2
957,963 + Dsui_0929 0.71 -0.6
957,974 + Dsui_0929 0.73 -1.2
957,991 + Dsui_0929 0.75 +0.4
958,078 - +0.4
958,123 + -0.6
958,206 + -3.1
958,468 + +0.2
958,477 + -0.1
958,485 - +0.4
958,636 + Dsui_0930 0.14 +0.3
958,677 + Dsui_0930 0.17 +0.1
958,685 - Dsui_0930 0.18 -0.6
958,693 + Dsui_0930 0.18 +0.2
958,788 - Dsui_0930 0.25 +0.4
958,921 + Dsui_0930 0.35 +0.4
959,064 - Dsui_0930 0.46 -1.2
959,064 - Dsui_0930 0.46 -2.2
959,185 + Dsui_0930 0.55 +0.1
959,246 - Dsui_0930 0.59 -1.2
959,502 + Dsui_0930 0.78 +0.0
959,533 + Dsui_0930 0.80 +0.3
959,537 + Dsui_0930 0.81 +0.2
959,568 + Dsui_0930 0.83 +0.2
959,620 - Dsui_0930 0.87 -0.6
959,695 - -0.4
959,700 - -1.2
959,747 - -0.2
959,747 - +0.4
959,747 - -1.4
959,784 - +0.2
959,819 + -0.1
959,835 + -1.0
959,858 + -0.8
959,858 + +0.4
959,866 - +0.4
959,868 + -1.5
959,944 - -2.8
959,950 + -0.6
959,950 + +0.4
959,972 - +0.4
960,035 + Dsui_0931 0.14 -2.2
960,090 - Dsui_0931 0.24 -0.5
960,090 - Dsui_0931 0.24 -0.0
960,100 - Dsui_0931 0.26 -1.8
960,124 + Dsui_0931 0.31 -0.6
960,169 - Dsui_0931 0.40 +0.1
960,196 - Dsui_0931 0.45 +0.4
960,213 - Dsui_0931 0.49 +0.0
960,273 - Dsui_0931 0.61 -0.0
960,349 - Dsui_0931 0.76 +2.0
960,445 + -0.8
960,445 + -0.1
960,448 - -0.4
960,453 - +0.6
960,453 - -0.4
960,575 + Dsui_0932 0.12 +0.3
960,597 - Dsui_0932 0.15 -2.0
960,663 - Dsui_0932 0.25 -0.6
960,711 + Dsui_0932 0.32 -0.3

Or see this region's nucleotide sequence