Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0923 and Dsui_0924 are separated by 76 nucleotides Dsui_0924 and Dsui_0925 are separated by 2 nucleotides Dsui_0925 and Dsui_0926 are separated by 66 nucleotides
Dsui_0923: Dsui_0923 - putative iron-regulated membrane protein, at 951,058 to 952,206
_0923
Dsui_0924: Dsui_0924 - putative permease, at 952,283 to 953,743
_0924
Dsui_0925: Dsui_0925 - small redox-active disulfide protein 2, at 953,746 to 953,988
_0925
Dsui_0926: Dsui_0926 - fumarate hydratase, class II, at 954,055 to 955,446
_0926
Position (kb) 952
953
954 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 951.467 kb on - strand, within Dsui_0923 at 951.527 kb on + strand, within Dsui_0923 at 951.638 kb on - strand at 951.657 kb on - strand, within Dsui_0923 at 951.761 kb on - strand, within Dsui_0923 at 951.761 kb on - strand, within Dsui_0923 at 951.782 kb on - strand, within Dsui_0923 at 951.943 kb on - strand, within Dsui_0923 at 952.022 kb on + strand, within Dsui_0923 at 952.027 kb on + strand at 952.027 kb on + strand, within Dsui_0923 at 952.030 kb on - strand, within Dsui_0923 at 952.051 kb on + strand, within Dsui_0923 at 952.062 kb on + strand, within Dsui_0923 at 952.159 kb on - strand at 952.208 kb on - strand at 952.249 kb on + strand at 952.318 kb on - strand at 952.402 kb on - strand at 952.526 kb on - strand, within Dsui_0924 at 952.563 kb on + strand at 952.621 kb on + strand at 952.621 kb on + strand, within Dsui_0924 at 952.629 kb on - strand at 952.629 kb on - strand, within Dsui_0924 at 952.629 kb on - strand at 952.773 kb on - strand, within Dsui_0924 at 952.883 kb on - strand at 952.889 kb on + strand, within Dsui_0924 at 952.889 kb on + strand at 953.258 kb on - strand, within Dsui_0924 at 953.258 kb on - strand, within Dsui_0924 at 953.343 kb on - strand at 953.378 kb on + strand, within Dsui_0924 at 953.422 kb on + strand, within Dsui_0924 at 953.430 kb on + strand, within Dsui_0924 at 953.432 kb on - strand at 953.448 kb on + strand, within Dsui_0924 at 953.489 kb on + strand, within Dsui_0924 at 953.500 kb on + strand, within Dsui_0924 at 953.512 kb on - strand at 953.578 kb on - strand, within Dsui_0924 at 953.580 kb on + strand, within Dsui_0924 at 953.620 kb on + strand at 953.753 kb on + strand at 953.753 kb on + strand at 953.761 kb on - strand at 953.761 kb on - strand at 953.862 kb on - strand, within Dsui_0925 at 953.970 kb on + strand at 954.080 kb on + strand at 954.137 kb on + strand at 954.139 kb on + strand at 954.145 kb on - strand at 954.288 kb on + strand, within Dsui_0926 at 954.392 kb on + strand, within Dsui_0926 at 954.412 kb on + strand, within Dsui_0926 at 954.448 kb on - strand, within Dsui_0926 at 954.659 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 951,467 - Dsui_0923 0.36 -1.2 951,527 + Dsui_0923 0.41 -1.7 951,638 - +0.3 951,657 - Dsui_0923 0.52 +0.3 951,761 - Dsui_0923 0.61 -1.2 951,761 - Dsui_0923 0.61 -1.7 951,782 - Dsui_0923 0.63 -2.0 951,943 - Dsui_0923 0.77 +0.1 952,022 + Dsui_0923 0.84 -2.0 952,027 + +0.3 952,027 + Dsui_0923 0.84 -0.7 952,030 - Dsui_0923 0.85 -1.7 952,051 + Dsui_0923 0.86 -2.7 952,062 + Dsui_0923 0.87 -0.7 952,159 - -0.7 952,208 - +0.3 952,249 + -2.2 952,318 - -0.7 952,402 - +0.4 952,526 - Dsui_0924 0.17 -3.3 952,563 + +0.4 952,621 + -0.6 952,621 + Dsui_0924 0.23 -0.6 952,629 - +0.4 952,629 - Dsui_0924 0.24 -0.6 952,629 - +0.4 952,773 - Dsui_0924 0.34 -2.0 952,883 - -0.6 952,889 + Dsui_0924 0.41 +0.4 952,889 + -0.6 953,258 - Dsui_0924 0.67 -1.2 953,258 - Dsui_0924 0.67 +0.4 953,343 - +0.4 953,378 + Dsui_0924 0.75 -0.2 953,422 + Dsui_0924 0.78 -0.6 953,430 + Dsui_0924 0.79 -1.6 953,432 - +0.4 953,448 + Dsui_0924 0.80 -1.6 953,489 + Dsui_0924 0.83 -2.6 953,500 + Dsui_0924 0.83 +0.4 953,512 - +0.4 953,578 - Dsui_0924 0.89 -0.6 953,580 + Dsui_0924 0.89 +0.9 953,620 + -0.5 953,753 + -0.3 953,753 + -2.5 953,761 - -3.0 953,761 - +0.4 953,862 - Dsui_0925 0.48 -1.2 953,970 + -1.2 954,080 + -0.3 954,137 + -1.0 954,139 + -0.3 954,145 - -1.6 954,288 + Dsui_0926 0.17 -2.2 954,392 + Dsui_0926 0.24 -0.7 954,412 + Dsui_0926 0.26 -0.4 954,448 - Dsui_0926 0.28 -0.6 954,659 - +0.4
Or see this region's nucleotide sequence