Strain Fitness in Dechlorosoma suillum PS around Dsui_0918

Experiment: ALP with perchlorate 3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0917 and Dsui_0918 overlap by 4 nucleotidesDsui_0918 and Dsui_0919 are separated by 336 nucleotides Dsui_0917: Dsui_0917 - integrase family protein, at 939,922 to 941,823 _0917 Dsui_0918: Dsui_0918 - TnsA endonuclease N terminal protein, at 941,820 to 942,467 _0918 Dsui_0919: Dsui_0919 - response regulator containing a CheY-like receiver domain and an HD-GYP domain, at 942,804 to 943,955 _0919 Position (kb) 941 942 943Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 940.825 kb on + strand, within Dsui_0917at 940.877 kb on + strand, within Dsui_0917at 940.898 kb on + strand, within Dsui_0917at 940.899 kb on + strand, within Dsui_0917at 940.899 kb on + strand, within Dsui_0917at 940.907 kb on - strand, within Dsui_0917at 940.968 kb on + strand, within Dsui_0917at 940.968 kb on + strand, within Dsui_0917at 940.968 kb on + strand, within Dsui_0917at 940.968 kb on + strand, within Dsui_0917at 940.968 kb on + strand, within Dsui_0917at 940.968 kb on + strand, within Dsui_0917at 940.968 kb on + strand, within Dsui_0917at 940.968 kb on + strand, within Dsui_0917at 940.968 kb on + strandat 940.968 kb on + strand, within Dsui_0917at 940.968 kb on + strand, within Dsui_0917at 940.968 kb on + strand, within Dsui_0917at 940.968 kb on + strand, within Dsui_0917at 940.973 kb on + strand, within Dsui_0917at 940.976 kb on - strand, within Dsui_0917at 940.976 kb on - strand, within Dsui_0917at 940.976 kb on - strand, within Dsui_0917at 940.976 kb on - strand, within Dsui_0917at 940.976 kb on - strand, within Dsui_0917at 940.976 kb on - strand, within Dsui_0917at 940.976 kb on - strand, within Dsui_0917at 940.976 kb on - strand, within Dsui_0917at 940.976 kb on - strand, within Dsui_0917at 940.981 kb on + strand, within Dsui_0917at 940.981 kb on + strand, within Dsui_0917at 940.981 kb on + strand, within Dsui_0917at 940.989 kb on - strand, within Dsui_0917at 941.022 kb on + strand, within Dsui_0917at 941.079 kb on + strand, within Dsui_0917at 941.179 kb on + strandat 941.194 kb on + strandat 941.227 kb on + strand, within Dsui_0917at 941.228 kb on + strand, within Dsui_0917at 941.279 kb on + strand, within Dsui_0917at 941.279 kb on + strand, within Dsui_0917at 941.287 kb on - strandat 941.304 kb on - strand, within Dsui_0917at 941.304 kb on - strand, within Dsui_0917at 941.356 kb on + strand, within Dsui_0917at 941.380 kb on - strand, within Dsui_0917at 941.407 kb on + strand, within Dsui_0917at 941.448 kb on - strand, within Dsui_0917at 941.477 kb on + strand, within Dsui_0917at 941.479 kb on + strand, within Dsui_0917at 941.479 kb on + strand, within Dsui_0917at 941.479 kb on + strand, within Dsui_0917at 941.487 kb on + strand, within Dsui_0917at 941.487 kb on - strand, within Dsui_0917at 941.490 kb on - strand, within Dsui_0917at 941.496 kb on + strand, within Dsui_0917at 941.497 kb on + strand, within Dsui_0917at 941.497 kb on + strand, within Dsui_0917at 941.497 kb on + strand, within Dsui_0917at 941.497 kb on + strand, within Dsui_0917at 941.505 kb on - strand, within Dsui_0917at 941.505 kb on - strand, within Dsui_0917at 941.505 kb on - strand, within Dsui_0917at 941.505 kb on - strand, within Dsui_0917at 941.534 kb on + strand, within Dsui_0917at 941.540 kb on - strand, within Dsui_0917at 941.598 kb on - strand, within Dsui_0917at 941.626 kb on + strand, within Dsui_0917at 941.628 kb on + strand, within Dsui_0917at 941.647 kb on - strandat 941.657 kb on - strandat 941.675 kb on - strandat 941.750 kb on - strandat 941.764 kb on + strandat 941.809 kb on + strandat 941.907 kb on + strand, within Dsui_0918at 941.908 kb on + strand, within Dsui_0918at 941.922 kb on + strand, within Dsui_0918at 941.937 kb on - strand, within Dsui_0918at 941.941 kb on + strand, within Dsui_0918at 941.960 kb on - strand, within Dsui_0918at 942.005 kb on + strand, within Dsui_0918at 942.017 kb on + strand, within Dsui_0918at 942.092 kb on + strand, within Dsui_0918at 942.125 kb on + strand, within Dsui_0918at 942.144 kb on - strandat 942.159 kb on + strand, within Dsui_0918at 942.159 kb on - strand, within Dsui_0918at 942.159 kb on - strand, within Dsui_0918at 942.164 kb on + strand, within Dsui_0918at 942.164 kb on + strand, within Dsui_0918at 942.164 kb on + strandat 942.167 kb on - strand, within Dsui_0918at 942.172 kb on - strand, within Dsui_0918at 942.172 kb on - strand, within Dsui_0918at 942.172 kb on - strand, within Dsui_0918at 942.172 kb on - strand, within Dsui_0918at 942.172 kb on - strand, within Dsui_0918at 942.177 kb on - strand, within Dsui_0918at 942.177 kb on - strand, within Dsui_0918at 942.195 kb on + strand, within Dsui_0918at 942.217 kb on + strand, within Dsui_0918at 942.220 kb on - strand, within Dsui_0918at 942.220 kb on - strand, within Dsui_0918at 942.227 kb on + strand, within Dsui_0918at 942.254 kb on + strand, within Dsui_0918at 942.262 kb on + strand, within Dsui_0918at 942.262 kb on - strand, within Dsui_0918at 942.262 kb on - strand, within Dsui_0918at 942.262 kb on - strand, within Dsui_0918at 942.268 kb on - strand, within Dsui_0918at 942.272 kb on + strand, within Dsui_0918at 942.358 kb on + strand, within Dsui_0918at 942.530 kb on + strandat 942.569 kb on - strandat 942.589 kb on + strandat 942.707 kb on + strandat 942.852 kb on - strandat 943.010 kb on + strand, within Dsui_0919at 943.073 kb on + strand, within Dsui_0919at 943.153 kb on - strand, within Dsui_0919at 943.183 kb on - strand, within Dsui_0919at 943.187 kb on + strand, within Dsui_0919at 943.277 kb on + strand, within Dsui_0919at 943.284 kb on - strand, within Dsui_0919at 943.285 kb on - strand, within Dsui_0919at 943.361 kb on + strand, within Dsui_0919at 943.369 kb on - strand, within Dsui_0919at 943.396 kb on - strand, within Dsui_0919

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM
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940,825 + Dsui_0917 0.47 -0.7
940,877 + Dsui_0917 0.50 +0.3
940,898 + Dsui_0917 0.51 -1.3
940,899 + Dsui_0917 0.51 +0.3
940,899 + Dsui_0917 0.51 -1.7
940,907 - Dsui_0917 0.52 -1.3
940,968 + Dsui_0917 0.55 -1.7
940,968 + Dsui_0917 0.55 +0.3
940,968 + Dsui_0917 0.55 -0.7
940,968 + Dsui_0917 0.55 +0.3
940,968 + Dsui_0917 0.55 -3.8
940,968 + Dsui_0917 0.55 -0.7
940,968 + Dsui_0917 0.55 +0.3
940,968 + Dsui_0917 0.55 -0.7
940,968 + +0.3
940,968 + Dsui_0917 0.55 -1.7
940,968 + Dsui_0917 0.55 -0.7
940,968 + Dsui_0917 0.55 +0.3
940,968 + Dsui_0917 0.55 -1.7
940,973 + Dsui_0917 0.55 +0.3
940,976 - Dsui_0917 0.55 +0.3
940,976 - Dsui_0917 0.55 -0.7
940,976 - Dsui_0917 0.55 +0.3
940,976 - Dsui_0917 0.55 +0.3
940,976 - Dsui_0917 0.55 -0.7
940,976 - Dsui_0917 0.55 -3.0
940,976 - Dsui_0917 0.55 -1.3
940,976 - Dsui_0917 0.55 -0.7
940,976 - Dsui_0917 0.55 +0.3
940,981 + Dsui_0917 0.56 -1.7
940,981 + Dsui_0917 0.56 -0.7
940,981 + Dsui_0917 0.56 +0.3
940,989 - Dsui_0917 0.56 +0.3
941,022 + Dsui_0917 0.58 +0.3
941,079 + Dsui_0917 0.61 +0.3
941,179 + +0.3
941,194 + +0.3
941,227 + Dsui_0917 0.69 +0.3
941,228 + Dsui_0917 0.69 +0.3
941,279 + Dsui_0917 0.71 +0.3
941,279 + Dsui_0917 0.71 +0.3
941,287 - +0.3
941,304 - Dsui_0917 0.73 +0.3
941,304 - Dsui_0917 0.73 -0.7
941,356 + Dsui_0917 0.75 +0.3
941,380 - Dsui_0917 0.77 -1.7
941,407 + Dsui_0917 0.78 +0.0
941,448 - Dsui_0917 0.80 -2.0
941,477 + Dsui_0917 0.82 -1.3
941,479 + Dsui_0917 0.82 +0.3
941,479 + Dsui_0917 0.82 +0.3
941,479 + Dsui_0917 0.82 +0.3
941,487 + Dsui_0917 0.82 -0.7
941,487 - Dsui_0917 0.82 -1.7
941,490 - Dsui_0917 0.82 +0.3
941,496 + Dsui_0917 0.83 +0.3
941,497 + Dsui_0917 0.83 -0.7
941,497 + Dsui_0917 0.83 -1.3
941,497 + Dsui_0917 0.83 -0.7
941,497 + Dsui_0917 0.83 +0.3
941,505 - Dsui_0917 0.83 -0.7
941,505 - Dsui_0917 0.83 +0.3
941,505 - Dsui_0917 0.83 +0.3
941,505 - Dsui_0917 0.83 -2.3
941,534 + Dsui_0917 0.85 -1.3
941,540 - Dsui_0917 0.85 +0.3
941,598 - Dsui_0917 0.88 +0.3
941,626 + Dsui_0917 0.90 -2.5
941,628 + Dsui_0917 0.90 +0.3
941,647 - +0.3
941,657 - -1.3
941,675 - -1.3
941,750 - -0.7
941,764 + -2.3
941,809 + +0.3
941,907 + Dsui_0918 0.13 -1.3
941,908 + Dsui_0918 0.14 +0.3
941,922 + Dsui_0918 0.16 -1.3
941,937 - Dsui_0918 0.18 +0.3
941,941 + Dsui_0918 0.19 +0.3
941,960 - Dsui_0918 0.22 +0.3
942,005 + Dsui_0918 0.29 +0.3
942,017 + Dsui_0918 0.30 +0.3
942,092 + Dsui_0918 0.42 -0.7
942,125 + Dsui_0918 0.47 -0.7
942,144 - +0.3
942,159 + Dsui_0918 0.52 +0.3
942,159 - Dsui_0918 0.52 +0.3
942,159 - Dsui_0918 0.52 -1.7
942,164 + Dsui_0918 0.53 -1.3
942,164 + Dsui_0918 0.53 +0.3
942,164 + +0.3
942,167 - Dsui_0918 0.54 +0.3
942,172 - Dsui_0918 0.54 +0.3
942,172 - Dsui_0918 0.54 +0.3
942,172 - Dsui_0918 0.54 +0.3
942,172 - Dsui_0918 0.54 -0.7
942,172 - Dsui_0918 0.54 -0.7
942,177 - Dsui_0918 0.55 -0.7
942,177 - Dsui_0918 0.55 +0.3
942,195 + Dsui_0918 0.58 +0.3
942,217 + Dsui_0918 0.61 -2.0
942,220 - Dsui_0918 0.62 -0.7
942,220 - Dsui_0918 0.62 -2.8
942,227 + Dsui_0918 0.63 +0.3
942,254 + Dsui_0918 0.67 -2.7
942,262 + Dsui_0918 0.68 +0.3
942,262 - Dsui_0918 0.68 -2.5
942,262 - Dsui_0918 0.68 -0.7
942,262 - Dsui_0918 0.68 -1.3
942,268 - Dsui_0918 0.69 +0.3
942,272 + Dsui_0918 0.70 -0.7
942,358 + Dsui_0918 0.83 -1.7
942,530 + +0.3
942,569 - +0.3
942,589 + +1.5
942,707 + -0.7
942,852 - -2.7
943,010 + Dsui_0919 0.18 -0.7
943,073 + Dsui_0919 0.23 -0.6
943,153 - Dsui_0919 0.30 -1.2
943,183 - Dsui_0919 0.33 -1.2
943,187 + Dsui_0919 0.33 -0.5
943,277 + Dsui_0919 0.41 -0.7
943,284 - Dsui_0919 0.42 -0.7
943,285 - Dsui_0919 0.42 +0.3
943,361 + Dsui_0919 0.48 -0.7
943,369 - Dsui_0919 0.49 -1.2
943,396 - Dsui_0919 0.51 +0.3

Or see this region's nucleotide sequence