Strain Fitness in Dechlorosoma suillum PS around Dsui_0917

Experiment: ALP with perchlorate 3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0915 and Dsui_0916 are separated by 1 nucleotidesDsui_0916 and Dsui_0917 overlap by 11 nucleotidesDsui_0917 and Dsui_0918 overlap by 4 nucleotidesDsui_0918 and Dsui_0919 are separated by 336 nucleotides Dsui_0915: Dsui_0915 - hypothetical protein, at 938,018 to 939,034 _0915 Dsui_0916: Dsui_0916 - TniB protein, at 939,036 to 939,932 _0916 Dsui_0917: Dsui_0917 - integrase family protein, at 939,922 to 941,823 _0917 Dsui_0918: Dsui_0918 - TnsA endonuclease N terminal protein, at 941,820 to 942,467 _0918 Dsui_0919: Dsui_0919 - response regulator containing a CheY-like receiver domain and an HD-GYP domain, at 942,804 to 943,955 _0919 Position (kb) 939 940 941 942Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 938.943 kb on + strandat 938.943 kb on + strandat 938.943 kb on + strandat 938.948 kb on + strandat 938.948 kb on + strandat 938.948 kb on + strandat 938.948 kb on + strandat 938.956 kb on - strandat 938.996 kb on + strandat 938.997 kb on + strandat 939.006 kb on - strandat 939.010 kb on - strandat 939.055 kb on - strandat 939.059 kb on + strandat 939.059 kb on + strandat 939.067 kb on - strandat 939.150 kb on - strand, within Dsui_0916at 939.150 kb on - strand, within Dsui_0916at 939.192 kb on - strand, within Dsui_0916at 939.244 kb on + strand, within Dsui_0916at 939.250 kb on - strand, within Dsui_0916at 939.252 kb on - strand, within Dsui_0916at 939.252 kb on - strand, within Dsui_0916at 939.267 kb on - strand, within Dsui_0916at 939.315 kb on - strand, within Dsui_0916at 939.336 kb on + strand, within Dsui_0916at 939.336 kb on + strand, within Dsui_0916at 939.344 kb on - strand, within Dsui_0916at 939.344 kb on - strand, within Dsui_0916at 939.353 kb on - strand, within Dsui_0916at 939.353 kb on - strand, within Dsui_0916at 939.376 kb on - strand, within Dsui_0916at 939.501 kb on - strand, within Dsui_0916at 939.526 kb on - strand, within Dsui_0916at 939.534 kb on - strand, within Dsui_0916at 939.534 kb on - strand, within Dsui_0916at 939.544 kb on - strand, within Dsui_0916at 939.559 kb on + strand, within Dsui_0916at 939.559 kb on + strand, within Dsui_0916at 939.559 kb on + strand, within Dsui_0916at 939.559 kb on + strand, within Dsui_0916at 939.559 kb on + strand, within Dsui_0916at 939.559 kb on + strand, within Dsui_0916at 939.559 kb on + strand, within Dsui_0916at 939.559 kb on + strand, within Dsui_0916at 939.559 kb on + strand, within Dsui_0916at 939.559 kb on + strand, within Dsui_0916at 939.567 kb on - strand, within Dsui_0916at 939.567 kb on - strand, within Dsui_0916at 939.567 kb on - strand, within Dsui_0916at 939.567 kb on - strand, within Dsui_0916at 939.567 kb on - strand, within Dsui_0916at 939.567 kb on - strand, within Dsui_0916at 939.660 kb on - strand, within Dsui_0916at 939.664 kb on + strand, within Dsui_0916at 939.666 kb on - strand, within Dsui_0916at 939.692 kb on - strand, within Dsui_0916at 939.711 kb on + strand, within Dsui_0916at 939.726 kb on - strand, within Dsui_0916at 939.726 kb on - strand, within Dsui_0916at 939.777 kb on - strand, within Dsui_0916at 939.799 kb on - strand, within Dsui_0916at 939.817 kb on + strand, within Dsui_0916at 939.817 kb on + strand, within Dsui_0916at 939.817 kb on + strand, within Dsui_0916at 939.817 kb on + strand, within Dsui_0916at 939.818 kb on - strand, within Dsui_0916at 939.820 kb on - strand, within Dsui_0916at 939.822 kb on + strand, within Dsui_0916at 939.825 kb on - strand, within Dsui_0916at 939.835 kb on - strand, within Dsui_0916at 940.092 kb on + strandat 940.100 kb on - strandat 940.117 kb on + strand, within Dsui_0917at 940.185 kb on - strand, within Dsui_0917at 940.186 kb on + strand, within Dsui_0917at 940.209 kb on - strand, within Dsui_0917at 940.211 kb on + strand, within Dsui_0917at 940.228 kb on + strand, within Dsui_0917at 940.229 kb on - strand, within Dsui_0917at 940.229 kb on - strand, within Dsui_0917at 940.281 kb on + strand, within Dsui_0917at 940.299 kb on + strand, within Dsui_0917at 940.358 kb on + strand, within Dsui_0917at 940.360 kb on + strand, within Dsui_0917at 940.368 kb on - strand, within Dsui_0917at 940.373 kb on - strand, within Dsui_0917at 940.378 kb on + strand, within Dsui_0917at 940.380 kb on + strand, within Dsui_0917at 940.380 kb on + strand, within Dsui_0917at 940.385 kb on + strandat 940.385 kb on - strand, within Dsui_0917at 940.388 kb on - strand, within Dsui_0917at 940.430 kb on + strand, within Dsui_0917at 940.445 kb on - strand, within Dsui_0917at 940.445 kb on - strand, within Dsui_0917at 940.467 kb on + strand, within Dsui_0917at 940.475 kb on - strand, within Dsui_0917at 940.479 kb on + strand, within Dsui_0917at 940.597 kb on + strand, within Dsui_0917at 940.605 kb on + strand, within Dsui_0917at 940.605 kb on + strand, within Dsui_0917at 940.605 kb on + strand, within Dsui_0917at 940.605 kb on + strand, within Dsui_0917at 940.605 kb on + strand, within Dsui_0917at 940.605 kb on + strand, within Dsui_0917at 940.605 kb on + strand, within Dsui_0917at 940.605 kb on + strand, within Dsui_0917at 940.605 kb on + strand, within Dsui_0917at 940.608 kb on - strand, within Dsui_0917at 940.613 kb on - strand, within Dsui_0917at 940.613 kb on - strand, within Dsui_0917at 940.613 kb on - strand, within Dsui_0917at 940.613 kb on - strand, within Dsui_0917at 940.683 kb on - strand, within Dsui_0917at 940.683 kb on - strand, within Dsui_0917at 940.745 kb on + strand, within Dsui_0917at 940.745 kb on + strand, within Dsui_0917at 940.825 kb on + strand, within Dsui_0917at 940.877 kb on + strand, within Dsui_0917at 940.898 kb on + strand, within Dsui_0917at 940.899 kb on + strand, within Dsui_0917at 940.899 kb on + strand, within Dsui_0917at 940.907 kb on - strand, within Dsui_0917at 940.968 kb on + strand, within Dsui_0917at 940.968 kb on + strand, within Dsui_0917at 940.968 kb on + strand, within Dsui_0917at 940.968 kb on + strand, within Dsui_0917at 940.968 kb on + strand, within Dsui_0917at 940.968 kb on + strand, within Dsui_0917at 940.968 kb on + strand, within Dsui_0917at 940.968 kb on + strand, within Dsui_0917at 940.968 kb on + strandat 940.968 kb on + strand, within Dsui_0917at 940.968 kb on + strand, within Dsui_0917at 940.968 kb on + strand, within Dsui_0917at 940.968 kb on + strand, within Dsui_0917at 940.973 kb on + strand, within Dsui_0917at 940.976 kb on - strand, within Dsui_0917at 940.976 kb on - strand, within Dsui_0917at 940.976 kb on - strand, within Dsui_0917at 940.976 kb on - strand, within Dsui_0917at 940.976 kb on - strand, within Dsui_0917at 940.976 kb on - strand, within Dsui_0917at 940.976 kb on - strand, within Dsui_0917at 940.976 kb on - strand, within Dsui_0917at 940.976 kb on - strand, within Dsui_0917at 940.981 kb on + strand, within Dsui_0917at 940.981 kb on + strand, within Dsui_0917at 940.981 kb on + strand, within Dsui_0917at 940.989 kb on - strand, within Dsui_0917at 941.022 kb on + strand, within Dsui_0917at 941.079 kb on + strand, within Dsui_0917at 941.179 kb on + strandat 941.194 kb on + strandat 941.227 kb on + strand, within Dsui_0917at 941.228 kb on + strand, within Dsui_0917at 941.279 kb on + strand, within Dsui_0917at 941.279 kb on + strand, within Dsui_0917at 941.287 kb on - strandat 941.304 kb on - strand, within Dsui_0917at 941.304 kb on - strand, within Dsui_0917at 941.356 kb on + strand, within Dsui_0917at 941.380 kb on - strand, within Dsui_0917at 941.407 kb on + strand, within Dsui_0917at 941.448 kb on - strand, within Dsui_0917at 941.477 kb on + strand, within Dsui_0917at 941.479 kb on + strand, within Dsui_0917at 941.479 kb on + strand, within Dsui_0917at 941.479 kb on + strand, within Dsui_0917at 941.487 kb on + strand, within Dsui_0917at 941.487 kb on - strand, within Dsui_0917at 941.490 kb on - strand, within Dsui_0917at 941.496 kb on + strand, within Dsui_0917at 941.497 kb on + strand, within Dsui_0917at 941.497 kb on + strand, within Dsui_0917at 941.497 kb on + strand, within Dsui_0917at 941.497 kb on + strand, within Dsui_0917at 941.505 kb on - strand, within Dsui_0917at 941.505 kb on - strand, within Dsui_0917at 941.505 kb on - strand, within Dsui_0917at 941.505 kb on - strand, within Dsui_0917at 941.534 kb on + strand, within Dsui_0917at 941.540 kb on - strand, within Dsui_0917at 941.598 kb on - strand, within Dsui_0917at 941.626 kb on + strand, within Dsui_0917at 941.628 kb on + strand, within Dsui_0917at 941.647 kb on - strandat 941.657 kb on - strandat 941.675 kb on - strandat 941.750 kb on - strandat 941.764 kb on + strandat 941.809 kb on + strandat 941.907 kb on + strand, within Dsui_0918at 941.908 kb on + strand, within Dsui_0918at 941.922 kb on + strand, within Dsui_0918at 941.937 kb on - strand, within Dsui_0918at 941.941 kb on + strand, within Dsui_0918at 941.960 kb on - strand, within Dsui_0918at 942.005 kb on + strand, within Dsui_0918at 942.017 kb on + strand, within Dsui_0918at 942.092 kb on + strand, within Dsui_0918at 942.125 kb on + strand, within Dsui_0918at 942.144 kb on - strandat 942.159 kb on + strand, within Dsui_0918at 942.159 kb on - strand, within Dsui_0918at 942.159 kb on - strand, within Dsui_0918at 942.164 kb on + strand, within Dsui_0918at 942.164 kb on + strand, within Dsui_0918at 942.164 kb on + strandat 942.167 kb on - strand, within Dsui_0918at 942.172 kb on - strand, within Dsui_0918at 942.172 kb on - strand, within Dsui_0918at 942.172 kb on - strand, within Dsui_0918at 942.172 kb on - strand, within Dsui_0918at 942.172 kb on - strand, within Dsui_0918at 942.177 kb on - strand, within Dsui_0918at 942.177 kb on - strand, within Dsui_0918at 942.195 kb on + strand, within Dsui_0918at 942.217 kb on + strand, within Dsui_0918at 942.220 kb on - strand, within Dsui_0918at 942.220 kb on - strand, within Dsui_0918at 942.227 kb on + strand, within Dsui_0918at 942.254 kb on + strand, within Dsui_0918at 942.262 kb on + strand, within Dsui_0918at 942.262 kb on - strand, within Dsui_0918at 942.262 kb on - strand, within Dsui_0918at 942.262 kb on - strand, within Dsui_0918at 942.268 kb on - strand, within Dsui_0918at 942.272 kb on + strand, within Dsui_0918at 942.358 kb on + strand, within Dsui_0918at 942.530 kb on + strandat 942.569 kb on - strandat 942.589 kb on + strandat 942.707 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM
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938,943 + -0.7
938,943 + -2.0
938,943 + -1.7
938,948 + -1.7
938,948 + -0.7
938,948 + +0.3
938,948 + +0.3
938,956 - -0.7
938,996 + -1.7
938,997 + +0.3
939,006 - +0.3
939,010 - -0.7
939,055 - +0.3
939,059 + +0.3
939,059 + +0.3
939,067 - +1.9
939,150 - Dsui_0916 0.13 +0.3
939,150 - Dsui_0916 0.13 -2.5
939,192 - Dsui_0916 0.17 -2.5
939,244 + Dsui_0916 0.23 -1.7
939,250 - Dsui_0916 0.24 -1.7
939,252 - Dsui_0916 0.24 +0.3
939,252 - Dsui_0916 0.24 +0.3
939,267 - Dsui_0916 0.26 +0.3
939,315 - Dsui_0916 0.31 -1.3
939,336 + Dsui_0916 0.33 -3.8
939,336 + Dsui_0916 0.33 -0.7
939,344 - Dsui_0916 0.34 +0.3
939,344 - Dsui_0916 0.34 +0.3
939,353 - Dsui_0916 0.35 -0.7
939,353 - Dsui_0916 0.35 -0.7
939,376 - Dsui_0916 0.38 +0.3
939,501 - Dsui_0916 0.52 +0.3
939,526 - Dsui_0916 0.55 +0.3
939,534 - Dsui_0916 0.56 +0.3
939,534 - Dsui_0916 0.56 -0.7
939,544 - Dsui_0916 0.57 -1.3
939,559 + Dsui_0916 0.58 -0.7
939,559 + Dsui_0916 0.58 -1.3
939,559 + Dsui_0916 0.58 -1.7
939,559 + Dsui_0916 0.58 -0.7
939,559 + Dsui_0916 0.58 +0.3
939,559 + Dsui_0916 0.58 +0.3
939,559 + Dsui_0916 0.58 +0.3
939,559 + Dsui_0916 0.58 +0.3
939,559 + Dsui_0916 0.58 -0.7
939,559 + Dsui_0916 0.58 +0.3
939,567 - Dsui_0916 0.59 +0.3
939,567 - Dsui_0916 0.59 +0.3
939,567 - Dsui_0916 0.59 -2.0
939,567 - Dsui_0916 0.59 -0.7
939,567 - Dsui_0916 0.59 +0.3
939,567 - Dsui_0916 0.59 -0.7
939,660 - Dsui_0916 0.70 -0.7
939,664 + Dsui_0916 0.70 +0.3
939,666 - Dsui_0916 0.70 -2.0
939,692 - Dsui_0916 0.73 +0.3
939,711 + Dsui_0916 0.75 +0.3
939,726 - Dsui_0916 0.77 -2.5
939,726 - Dsui_0916 0.77 -1.3
939,777 - Dsui_0916 0.83 +0.3
939,799 - Dsui_0916 0.85 -0.7
939,817 + Dsui_0916 0.87 +0.3
939,817 + Dsui_0916 0.87 +0.3
939,817 + Dsui_0916 0.87 -0.7
939,817 + Dsui_0916 0.87 -1.3
939,818 - Dsui_0916 0.87 -0.7
939,820 - Dsui_0916 0.87 +0.3
939,822 + Dsui_0916 0.88 -0.7
939,825 - Dsui_0916 0.88 -3.0
939,835 - Dsui_0916 0.89 -1.3
940,092 + +0.3
940,100 - -0.7
940,117 + Dsui_0917 0.10 +0.3
940,185 - Dsui_0917 0.14 -0.7
940,186 + Dsui_0917 0.14 -0.7
940,209 - Dsui_0917 0.15 +0.3
940,211 + Dsui_0917 0.15 -2.7
940,228 + Dsui_0917 0.16 -0.7
940,229 - Dsui_0917 0.16 +0.3
940,229 - Dsui_0917 0.16 -1.3
940,281 + Dsui_0917 0.19 +0.3
940,299 + Dsui_0917 0.20 +0.3
940,358 + Dsui_0917 0.23 -2.3
940,360 + Dsui_0917 0.23 +0.3
940,368 - Dsui_0917 0.23 -1.3
940,373 - Dsui_0917 0.24 +0.3
940,378 + Dsui_0917 0.24 +0.3
940,380 + Dsui_0917 0.24 -1.3
940,380 + Dsui_0917 0.24 -0.7
940,385 + +0.3
940,385 - Dsui_0917 0.24 +0.3
940,388 - Dsui_0917 0.25 -0.7
940,430 + Dsui_0917 0.27 -1.7
940,445 - Dsui_0917 0.27 -1.3
940,445 - Dsui_0917 0.27 -1.3
940,467 + Dsui_0917 0.29 -0.7
940,475 - Dsui_0917 0.29 -0.7
940,479 + Dsui_0917 0.29 -0.7
940,597 + Dsui_0917 0.35 +0.3
940,605 + Dsui_0917 0.36 +0.3
940,605 + Dsui_0917 0.36 -2.3
940,605 + Dsui_0917 0.36 +0.3
940,605 + Dsui_0917 0.36 +0.3
940,605 + Dsui_0917 0.36 +0.3
940,605 + Dsui_0917 0.36 +0.3
940,605 + Dsui_0917 0.36 -2.5
940,605 + Dsui_0917 0.36 +0.3
940,605 + Dsui_0917 0.36 +0.3
940,608 - Dsui_0917 0.36 +0.3
940,613 - Dsui_0917 0.36 +0.3
940,613 - Dsui_0917 0.36 -1.3
940,613 - Dsui_0917 0.36 +0.3
940,613 - Dsui_0917 0.36 +0.3
940,683 - Dsui_0917 0.40 -0.7
940,683 - Dsui_0917 0.40 -1.3
940,745 + Dsui_0917 0.43 +0.3
940,745 + Dsui_0917 0.43 -1.3
940,825 + Dsui_0917 0.47 -0.7
940,877 + Dsui_0917 0.50 +0.3
940,898 + Dsui_0917 0.51 -1.3
940,899 + Dsui_0917 0.51 +0.3
940,899 + Dsui_0917 0.51 -1.7
940,907 - Dsui_0917 0.52 -1.3
940,968 + Dsui_0917 0.55 -1.7
940,968 + Dsui_0917 0.55 +0.3
940,968 + Dsui_0917 0.55 -0.7
940,968 + Dsui_0917 0.55 +0.3
940,968 + Dsui_0917 0.55 -3.8
940,968 + Dsui_0917 0.55 -0.7
940,968 + Dsui_0917 0.55 +0.3
940,968 + Dsui_0917 0.55 -0.7
940,968 + +0.3
940,968 + Dsui_0917 0.55 -1.7
940,968 + Dsui_0917 0.55 -0.7
940,968 + Dsui_0917 0.55 +0.3
940,968 + Dsui_0917 0.55 -1.7
940,973 + Dsui_0917 0.55 +0.3
940,976 - Dsui_0917 0.55 +0.3
940,976 - Dsui_0917 0.55 -0.7
940,976 - Dsui_0917 0.55 +0.3
940,976 - Dsui_0917 0.55 +0.3
940,976 - Dsui_0917 0.55 -0.7
940,976 - Dsui_0917 0.55 -3.0
940,976 - Dsui_0917 0.55 -1.3
940,976 - Dsui_0917 0.55 -0.7
940,976 - Dsui_0917 0.55 +0.3
940,981 + Dsui_0917 0.56 -1.7
940,981 + Dsui_0917 0.56 -0.7
940,981 + Dsui_0917 0.56 +0.3
940,989 - Dsui_0917 0.56 +0.3
941,022 + Dsui_0917 0.58 +0.3
941,079 + Dsui_0917 0.61 +0.3
941,179 + +0.3
941,194 + +0.3
941,227 + Dsui_0917 0.69 +0.3
941,228 + Dsui_0917 0.69 +0.3
941,279 + Dsui_0917 0.71 +0.3
941,279 + Dsui_0917 0.71 +0.3
941,287 - +0.3
941,304 - Dsui_0917 0.73 +0.3
941,304 - Dsui_0917 0.73 -0.7
941,356 + Dsui_0917 0.75 +0.3
941,380 - Dsui_0917 0.77 -1.7
941,407 + Dsui_0917 0.78 +0.0
941,448 - Dsui_0917 0.80 -2.0
941,477 + Dsui_0917 0.82 -1.3
941,479 + Dsui_0917 0.82 +0.3
941,479 + Dsui_0917 0.82 +0.3
941,479 + Dsui_0917 0.82 +0.3
941,487 + Dsui_0917 0.82 -0.7
941,487 - Dsui_0917 0.82 -1.7
941,490 - Dsui_0917 0.82 +0.3
941,496 + Dsui_0917 0.83 +0.3
941,497 + Dsui_0917 0.83 -0.7
941,497 + Dsui_0917 0.83 -1.3
941,497 + Dsui_0917 0.83 -0.7
941,497 + Dsui_0917 0.83 +0.3
941,505 - Dsui_0917 0.83 -0.7
941,505 - Dsui_0917 0.83 +0.3
941,505 - Dsui_0917 0.83 +0.3
941,505 - Dsui_0917 0.83 -2.3
941,534 + Dsui_0917 0.85 -1.3
941,540 - Dsui_0917 0.85 +0.3
941,598 - Dsui_0917 0.88 +0.3
941,626 + Dsui_0917 0.90 -2.5
941,628 + Dsui_0917 0.90 +0.3
941,647 - +0.3
941,657 - -1.3
941,675 - -1.3
941,750 - -0.7
941,764 + -2.3
941,809 + +0.3
941,907 + Dsui_0918 0.13 -1.3
941,908 + Dsui_0918 0.14 +0.3
941,922 + Dsui_0918 0.16 -1.3
941,937 - Dsui_0918 0.18 +0.3
941,941 + Dsui_0918 0.19 +0.3
941,960 - Dsui_0918 0.22 +0.3
942,005 + Dsui_0918 0.29 +0.3
942,017 + Dsui_0918 0.30 +0.3
942,092 + Dsui_0918 0.42 -0.7
942,125 + Dsui_0918 0.47 -0.7
942,144 - +0.3
942,159 + Dsui_0918 0.52 +0.3
942,159 - Dsui_0918 0.52 +0.3
942,159 - Dsui_0918 0.52 -1.7
942,164 + Dsui_0918 0.53 -1.3
942,164 + Dsui_0918 0.53 +0.3
942,164 + +0.3
942,167 - Dsui_0918 0.54 +0.3
942,172 - Dsui_0918 0.54 +0.3
942,172 - Dsui_0918 0.54 +0.3
942,172 - Dsui_0918 0.54 +0.3
942,172 - Dsui_0918 0.54 -0.7
942,172 - Dsui_0918 0.54 -0.7
942,177 - Dsui_0918 0.55 -0.7
942,177 - Dsui_0918 0.55 +0.3
942,195 + Dsui_0918 0.58 +0.3
942,217 + Dsui_0918 0.61 -2.0
942,220 - Dsui_0918 0.62 -0.7
942,220 - Dsui_0918 0.62 -2.8
942,227 + Dsui_0918 0.63 +0.3
942,254 + Dsui_0918 0.67 -2.7
942,262 + Dsui_0918 0.68 +0.3
942,262 - Dsui_0918 0.68 -2.5
942,262 - Dsui_0918 0.68 -0.7
942,262 - Dsui_0918 0.68 -1.3
942,268 - Dsui_0918 0.69 +0.3
942,272 + Dsui_0918 0.70 -0.7
942,358 + Dsui_0918 0.83 -1.7
942,530 + +0.3
942,569 - +0.3
942,589 + +1.5
942,707 + -0.7

Or see this region's nucleotide sequence