Strain Fitness in Dechlorosoma suillum PS around Dsui_0892

Experiment: ALP with perchlorate 3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0891 and Dsui_0892 overlap by 14 nucleotidesDsui_0892 and Dsui_0893 overlap by 4 nucleotides Dsui_0891: Dsui_0891 - penicillin-binding protein 2, at 904,249 to 906,150 _0891 Dsui_0892: Dsui_0892 - rod shape-determining protein RodA, at 906,137 to 907,237 _0892 Dsui_0893: Dsui_0893 - rare lipoprotein A, at 907,234 to 908,274 _0893 Position (kb) 906 907 908Strain fitness (log2 ratio) -1 0 1at 907.268 kb on - strandat 907.276 kb on - strandat 907.477 kb on + strand, within Dsui_0893at 907.505 kb on + strand, within Dsui_0893at 907.510 kb on + strand, within Dsui_0893at 907.542 kb on + strand, within Dsui_0893at 907.652 kb on + strand, within Dsui_0893at 907.665 kb on - strandat 907.988 kb on - strand, within Dsui_0893at 908.111 kb on - strand, within Dsui_0893at 908.111 kb on - strand, within Dsui_0893at 908.181 kb on + strandat 908.186 kb on + strandat 908.237 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM
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907,268 - -0.1
907,276 - -1.7
907,477 + Dsui_0893 0.23 -0.2
907,505 + Dsui_0893 0.26 -0.3
907,510 + Dsui_0893 0.27 +0.1
907,542 + Dsui_0893 0.30 -0.0
907,652 + Dsui_0893 0.40 -0.1
907,665 - -1.3
907,988 - Dsui_0893 0.72 -1.7
908,111 - Dsui_0893 0.84 -1.3
908,111 - Dsui_0893 0.84 +0.3
908,181 + +0.1
908,186 + +0.0
908,237 - -0.7

Or see this region's nucleotide sequence