Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0862 and Dsui_0863 are separated by 154 nucleotides Dsui_0863 and Dsui_0864 are separated by 40 nucleotides Dsui_0864 and Dsui_0865 are separated by 16 nucleotides
Dsui_0862: Dsui_0862 - hypothetical protein, at 876,989 to 877,414
_0862
Dsui_0863: Dsui_0863 - phosphate regulon transcriptional regulatory protein PhoB, at 877,569 to 878,261
_0863
Dsui_0864: Dsui_0864 - phosphate regulon sensor kinase PhoR, at 878,302 to 879,603
_0864
Dsui_0865: Dsui_0865 - hypothetical protein, at 879,620 to 881,233
_0865
Position (kb)
878
879
880 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 877.412 kb on - strand at 877.424 kb on - strand at 877.442 kb on + strand at 877.463 kb on - strand at 877.463 kb on - strand at 877.463 kb on - strand at 877.463 kb on - strand at 877.466 kb on + strand at 877.481 kb on - strand at 877.528 kb on + strand at 877.532 kb on - strand at 877.548 kb on + strand at 877.548 kb on + strand at 877.548 kb on + strand at 877.548 kb on + strand at 877.556 kb on - strand at 877.558 kb on + strand at 877.572 kb on - strand at 877.575 kb on + strand at 877.591 kb on + strand at 877.602 kb on + strand at 877.610 kb on - strand at 877.645 kb on + strand, within Dsui_0863 at 877.649 kb on - strand, within Dsui_0863 at 877.716 kb on + strand, within Dsui_0863 at 877.787 kb on + strand, within Dsui_0863 at 877.812 kb on - strand at 877.850 kb on + strand, within Dsui_0863 at 877.850 kb on + strand, within Dsui_0863 at 877.913 kb on + strand, within Dsui_0863 at 877.915 kb on - strand, within Dsui_0863 at 877.918 kb on + strand, within Dsui_0863 at 877.931 kb on - strand at 877.950 kb on + strand, within Dsui_0863 at 878.038 kb on - strand, within Dsui_0863 at 878.045 kb on + strand, within Dsui_0863 at 878.114 kb on + strand, within Dsui_0863 at 878.114 kb on + strand, within Dsui_0863 at 878.122 kb on - strand, within Dsui_0863 at 878.122 kb on - strand, within Dsui_0863 at 878.157 kb on + strand, within Dsui_0863 at 878.157 kb on - strand at 878.189 kb on - strand, within Dsui_0863 at 878.210 kb on + strand at 878.228 kb on - strand at 878.312 kb on - strand at 878.346 kb on + strand at 878.358 kb on + strand at 878.424 kb on + strand at 878.432 kb on - strand at 878.468 kb on - strand at 878.536 kb on + strand, within Dsui_0864 at 878.633 kb on + strand, within Dsui_0864 at 878.699 kb on + strand, within Dsui_0864 at 878.777 kb on - strand, within Dsui_0864 at 878.817 kb on + strand, within Dsui_0864 at 878.824 kb on + strand, within Dsui_0864 at 878.824 kb on + strand, within Dsui_0864 at 878.872 kb on - strand, within Dsui_0864 at 878.872 kb on - strand, within Dsui_0864 at 878.891 kb on + strand, within Dsui_0864 at 878.906 kb on - strand, within Dsui_0864 at 878.962 kb on + strand, within Dsui_0864 at 879.041 kb on + strand, within Dsui_0864 at 879.042 kb on - strand, within Dsui_0864 at 879.049 kb on - strand, within Dsui_0864 at 879.061 kb on + strand, within Dsui_0864 at 879.071 kb on - strand, within Dsui_0864 at 879.071 kb on - strand, within Dsui_0864 at 879.086 kb on + strand, within Dsui_0864 at 879.178 kb on - strand, within Dsui_0864 at 879.195 kb on - strand at 879.200 kb on + strand, within Dsui_0864 at 879.260 kb on + strand, within Dsui_0864 at 879.353 kb on + strand, within Dsui_0864 at 879.410 kb on + strand, within Dsui_0864 at 879.419 kb on + strand, within Dsui_0864 at 879.504 kb on + strand at 879.554 kb on - strand at 879.569 kb on - strand at 879.584 kb on - strand at 879.588 kb on + strand at 879.631 kb on + strand at 879.631 kb on + strand at 879.663 kb on + strand at 879.671 kb on - strand at 879.746 kb on + strand at 879.759 kb on - strand at 879.800 kb on + strand, within Dsui_0865 at 879.858 kb on + strand, within Dsui_0865 at 879.888 kb on - strand, within Dsui_0865 at 880.094 kb on - strand, within Dsui_0865 at 880.178 kb on - strand at 880.231 kb on - strand, within Dsui_0865 at 880.286 kb on + strand at 880.333 kb on + strand at 880.402 kb on - strand, within Dsui_0865 at 880.581 kb on + strand, within Dsui_0865
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 877,412 - -0.4 877,424 - +0.2 877,442 + -0.7 877,463 - -1.3 877,463 - -0.7 877,463 - -0.7 877,463 - -0.7 877,466 + -2.0 877,481 - -1.3 877,528 + -0.7 877,532 - -0.7 877,548 + +0.3 877,548 + -0.3 877,548 + -0.5 877,548 + +2.6 877,556 - +0.3 877,558 + +0.7 877,572 - -2.7 877,575 + +0.2 877,591 + +0.3 877,602 + -0.6 877,610 - -0.7 877,645 + Dsui_0863 0.11 -1.5 877,649 - Dsui_0863 0.12 -0.7 877,716 + Dsui_0863 0.21 -1.0 877,787 + Dsui_0863 0.31 -0.2 877,812 - +0.3 877,850 + Dsui_0863 0.41 +0.8 877,850 + Dsui_0863 0.41 +0.6 877,913 + Dsui_0863 0.50 +0.3 877,915 - Dsui_0863 0.50 -1.3 877,918 + Dsui_0863 0.50 -0.5 877,931 - -0.7 877,950 + Dsui_0863 0.55 +0.0 878,038 - Dsui_0863 0.68 +0.1 878,045 + Dsui_0863 0.69 -0.7 878,114 + Dsui_0863 0.79 -0.3 878,114 + Dsui_0863 0.79 +1.7 878,122 - Dsui_0863 0.80 -0.7 878,122 - Dsui_0863 0.80 +0.3 878,157 + Dsui_0863 0.85 -0.4 878,157 - -0.7 878,189 - Dsui_0863 0.89 -1.7 878,210 + -0.6 878,228 - -0.7 878,312 - +0.3 878,346 + +0.4 878,358 + +0.8 878,424 + +0.2 878,432 - +0.3 878,468 - -1.3 878,536 + Dsui_0864 0.18 -0.2 878,633 + Dsui_0864 0.25 +0.8 878,699 + Dsui_0864 0.30 -0.3 878,777 - Dsui_0864 0.36 -0.5 878,817 + Dsui_0864 0.40 +1.3 878,824 + Dsui_0864 0.40 +0.5 878,824 + Dsui_0864 0.40 -0.3 878,872 - Dsui_0864 0.44 -1.3 878,872 - Dsui_0864 0.44 -2.7 878,891 + Dsui_0864 0.45 -0.3 878,906 - Dsui_0864 0.46 +0.3 878,962 + Dsui_0864 0.51 -0.2 879,041 + Dsui_0864 0.57 -1.1 879,042 - Dsui_0864 0.57 -0.7 879,049 - Dsui_0864 0.57 -2.5 879,061 + Dsui_0864 0.58 -0.8 879,071 - Dsui_0864 0.59 -3.6 879,071 - Dsui_0864 0.59 -1.3 879,086 + Dsui_0864 0.60 -1.2 879,178 - Dsui_0864 0.67 -0.7 879,195 - +0.3 879,200 + Dsui_0864 0.69 +1.0 879,260 + Dsui_0864 0.74 -0.8 879,353 + Dsui_0864 0.81 -0.0 879,410 + Dsui_0864 0.85 -1.3 879,419 + Dsui_0864 0.86 -1.2 879,504 + -0.2 879,554 - -1.3 879,569 - -2.0 879,584 - -0.7 879,588 + -0.4 879,631 + -0.3 879,631 + -0.7 879,663 + -0.0 879,671 - +0.3 879,746 + -0.7 879,759 - +0.2 879,800 + Dsui_0865 0.11 +0.3 879,858 + Dsui_0865 0.15 +0.3 879,888 - Dsui_0865 0.17 -1.3 880,094 - Dsui_0865 0.29 -1.7 880,178 - +0.3 880,231 - Dsui_0865 0.38 -1.3 880,286 + -1.3 880,333 + +0.3 880,402 - Dsui_0865 0.48 +0.3 880,581 + Dsui_0865 0.60 -2.3
Or see this region's nucleotide sequence