Strain Fitness in Dechlorosoma suillum PS around Dsui_0820

Experiment: ALP with perchlorate 3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0819 and Dsui_0820 are separated by 10 nucleotidesDsui_0820 and Dsui_0821 are separated by 189 nucleotides Dsui_0819: Dsui_0819 - DNA protecting protein DprA, at 830,349 to 831,467 _0819 Dsui_0820: Dsui_0820 - hypothetical protein, at 831,478 to 831,966 _0820 Dsui_0821: Dsui_0821 - DNA topoisomerase III, at 832,156 to 834,741 _0821 Position (kb) 831 832Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 830.500 kb on + strand, within Dsui_0819at 830.543 kb on - strand, within Dsui_0819at 830.546 kb on + strand, within Dsui_0819at 830.547 kb on + strand, within Dsui_0819at 830.555 kb on - strand, within Dsui_0819at 830.555 kb on - strand, within Dsui_0819at 830.555 kb on - strand, within Dsui_0819at 830.581 kb on + strand, within Dsui_0819at 830.595 kb on + strand, within Dsui_0819at 830.603 kb on - strand, within Dsui_0819at 830.605 kb on + strand, within Dsui_0819at 830.634 kb on - strand, within Dsui_0819at 830.645 kb on + strand, within Dsui_0819at 830.653 kb on - strand, within Dsui_0819at 830.658 kb on - strand, within Dsui_0819at 830.662 kb on + strand, within Dsui_0819at 830.662 kb on + strand, within Dsui_0819at 830.685 kb on + strand, within Dsui_0819at 830.688 kb on - strand, within Dsui_0819at 830.688 kb on - strand, within Dsui_0819at 830.693 kb on - strand, within Dsui_0819at 830.693 kb on - strand, within Dsui_0819at 830.693 kb on - strand, within Dsui_0819at 830.693 kb on - strand, within Dsui_0819at 830.718 kb on + strand, within Dsui_0819at 830.726 kb on - strand, within Dsui_0819at 830.733 kb on - strand, within Dsui_0819at 830.733 kb on - strand, within Dsui_0819at 830.771 kb on - strand, within Dsui_0819at 830.801 kb on - strand, within Dsui_0819at 830.817 kb on - strand, within Dsui_0819at 830.858 kb on + strand, within Dsui_0819at 830.879 kb on + strand, within Dsui_0819at 830.879 kb on + strand, within Dsui_0819at 830.887 kb on - strand, within Dsui_0819at 830.929 kb on + strand, within Dsui_0819at 830.962 kb on - strand, within Dsui_0819at 831.017 kb on + strand, within Dsui_0819at 831.019 kb on - strand, within Dsui_0819at 831.020 kb on - strand, within Dsui_0819at 831.020 kb on - strand, within Dsui_0819at 831.025 kb on - strand, within Dsui_0819at 831.029 kb on + strand, within Dsui_0819at 831.088 kb on + strand, within Dsui_0819at 831.112 kb on + strand, within Dsui_0819at 831.171 kb on - strand, within Dsui_0819at 831.183 kb on + strand, within Dsui_0819at 831.330 kb on - strand, within Dsui_0819at 831.330 kb on - strand, within Dsui_0819at 831.330 kb on - strand, within Dsui_0819at 831.332 kb on + strand, within Dsui_0819at 831.363 kb on + strandat 831.363 kb on + strandat 831.371 kb on - strandat 831.416 kb on + strandat 831.427 kb on + strandat 831.471 kb on - strandat 831.471 kb on - strandat 831.471 kb on - strandat 831.535 kb on - strand, within Dsui_0820at 831.587 kb on + strand, within Dsui_0820at 831.619 kb on + strand, within Dsui_0820at 831.645 kb on + strand, within Dsui_0820at 831.652 kb on - strand, within Dsui_0820at 831.653 kb on + strand, within Dsui_0820at 831.716 kb on - strand, within Dsui_0820at 831.767 kb on + strand, within Dsui_0820at 831.775 kb on - strand, within Dsui_0820at 831.777 kb on + strand, within Dsui_0820at 831.785 kb on - strand, within Dsui_0820at 831.797 kb on + strand, within Dsui_0820at 831.819 kb on - strand, within Dsui_0820at 831.822 kb on + strand, within Dsui_0820at 831.860 kb on + strand, within Dsui_0820at 831.861 kb on + strand, within Dsui_0820at 831.914 kb on + strand, within Dsui_0820at 832.013 kb on + strandat 832.049 kb on + strandat 832.055 kb on + strandat 832.064 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM
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830,500 + Dsui_0819 0.13 +0.3
830,543 - Dsui_0819 0.17 -1.2
830,546 + Dsui_0819 0.18 +0.2
830,547 + Dsui_0819 0.18 +0.1
830,555 - Dsui_0819 0.18 +0.3
830,555 - Dsui_0819 0.18 -1.2
830,555 - Dsui_0819 0.18 -0.7
830,581 + Dsui_0819 0.21 -0.4
830,595 + Dsui_0819 0.22 -0.6
830,603 - Dsui_0819 0.23 +0.9
830,605 + Dsui_0819 0.23 +0.1
830,634 - Dsui_0819 0.25 -3.0
830,645 + Dsui_0819 0.26 -0.5
830,653 - Dsui_0819 0.27 -0.2
830,658 - Dsui_0819 0.28 -0.7
830,662 + Dsui_0819 0.28 -0.3
830,662 + Dsui_0819 0.28 +0.5
830,685 + Dsui_0819 0.30 +0.2
830,688 - Dsui_0819 0.30 -2.8
830,688 - Dsui_0819 0.30 +0.3
830,693 - Dsui_0819 0.31 -3.1
830,693 - Dsui_0819 0.31 +0.3
830,693 - Dsui_0819 0.31 -1.7
830,693 - Dsui_0819 0.31 +0.0
830,718 + Dsui_0819 0.33 +0.2
830,726 - Dsui_0819 0.34 -0.2
830,733 - Dsui_0819 0.34 -2.0
830,733 - Dsui_0819 0.34 -1.2
830,771 - Dsui_0819 0.38 +0.3
830,801 - Dsui_0819 0.40 -1.2
830,817 - Dsui_0819 0.42 +0.0
830,858 + Dsui_0819 0.45 -0.1
830,879 + Dsui_0819 0.47 +0.6
830,879 + Dsui_0819 0.47 -1.0
830,887 - Dsui_0819 0.48 -2.5
830,929 + Dsui_0819 0.52 -0.5
830,962 - Dsui_0819 0.55 -1.7
831,017 + Dsui_0819 0.60 -0.6
831,019 - Dsui_0819 0.60 -2.4
831,020 - Dsui_0819 0.60 -1.7
831,020 - Dsui_0819 0.60 -2.2
831,025 - Dsui_0819 0.60 -1.6
831,029 + Dsui_0819 0.61 +0.7
831,088 + Dsui_0819 0.66 -0.4
831,112 + Dsui_0819 0.68 -0.7
831,171 - Dsui_0819 0.73 -2.5
831,183 + Dsui_0819 0.75 -1.2
831,330 - Dsui_0819 0.88 +0.3
831,330 - Dsui_0819 0.88 +2.9
831,330 - Dsui_0819 0.88 -2.7
831,332 + Dsui_0819 0.88 -1.7
831,363 + -0.7
831,363 + +1.9
831,371 - -1.0
831,416 + +0.2
831,427 + +0.7
831,471 - -0.0
831,471 - -0.8
831,471 - -0.1
831,535 - Dsui_0820 0.12 -2.2
831,587 + Dsui_0820 0.22 +0.2
831,619 + Dsui_0820 0.29 +0.3
831,645 + Dsui_0820 0.34 +0.3
831,652 - Dsui_0820 0.36 -2.2
831,653 + Dsui_0820 0.36 +0.2
831,716 - Dsui_0820 0.49 -1.0
831,767 + Dsui_0820 0.59 +0.1
831,775 - Dsui_0820 0.61 -0.7
831,777 + Dsui_0820 0.61 +0.3
831,785 - Dsui_0820 0.63 -3.2
831,797 + Dsui_0820 0.65 +0.2
831,819 - Dsui_0820 0.70 -0.9
831,822 + Dsui_0820 0.70 +0.0
831,860 + Dsui_0820 0.78 +0.2
831,861 + Dsui_0820 0.78 -0.2
831,914 + Dsui_0820 0.89 +0.5
832,013 + -0.1
832,049 + +0.1
832,055 + +0.1
832,064 + -0.6

Or see this region's nucleotide sequence