Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0794 and Dsui_0795 are separated by 20 nucleotides Dsui_0795 and Dsui_0796 are separated by 76 nucleotides Dsui_0796 and Dsui_0797 are separated by 9 nucleotides Dsui_0797 and Dsui_0798 are separated by 163 nucleotides
Dsui_0794: Dsui_0794 - putative protease with the C-terminal PDZ domain, at 800,796 to 802,634
_0794
Dsui_0795: Dsui_0795 - putative enzyme of the cupin superfamily, at 802,655 to 803,020
_0795
Dsui_0796: Dsui_0796 - hypothetical protein, at 803,097 to 803,474
_0796
Dsui_0797: Dsui_0797 - protein of unknown function (DUF1840), at 803,484 to 803,816
_0797
Dsui_0798: Dsui_0798 - carbonic anhydrase, at 803,980 to 804,636
_0798
Position (kb) 803
804 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 802.098 kb on - strand at 802.151 kb on + strand, within Dsui_0794 at 802.280 kb on + strand, within Dsui_0794 at 802.283 kb on - strand, within Dsui_0794 at 802.317 kb on + strand at 802.322 kb on + strand, within Dsui_0794 at 802.391 kb on + strand, within Dsui_0794 at 802.431 kb on + strand at 802.434 kb on - strand, within Dsui_0794 at 802.486 kb on + strand at 802.520 kb on + strand at 802.528 kb on - strand at 802.539 kb on - strand at 802.571 kb on - strand at 802.712 kb on - strand, within Dsui_0795 at 802.727 kb on - strand, within Dsui_0795 at 802.737 kb on - strand, within Dsui_0795 at 802.758 kb on + strand, within Dsui_0795 at 802.758 kb on + strand, within Dsui_0795 at 802.758 kb on + strand, within Dsui_0795 at 802.766 kb on - strand, within Dsui_0795 at 802.766 kb on - strand, within Dsui_0795 at 802.817 kb on - strand at 802.896 kb on + strand, within Dsui_0795 at 802.959 kb on + strand, within Dsui_0795 at 802.967 kb on - strand, within Dsui_0795 at 803.011 kb on + strand at 803.096 kb on - strand at 803.129 kb on + strand at 803.129 kb on + strand at 803.129 kb on + strand at 803.133 kb on - strand at 803.142 kb on + strand, within Dsui_0796 at 803.314 kb on + strand, within Dsui_0796 at 803.314 kb on + strand, within Dsui_0796 at 803.322 kb on - strand, within Dsui_0796 at 803.334 kb on + strand, within Dsui_0796 at 803.478 kb on - strand at 803.478 kb on - strand at 803.483 kb on - strand at 803.518 kb on - strand at 803.573 kb on - strand, within Dsui_0797 at 803.622 kb on - strand, within Dsui_0797 at 803.681 kb on + strand, within Dsui_0797 at 803.857 kb on - strand at 803.876 kb on - strand at 803.889 kb on - strand at 803.913 kb on + strand at 803.921 kb on - strand at 803.923 kb on + strand at 803.923 kb on + strand at 803.931 kb on + strand at 804.007 kb on + strand at 804.012 kb on + strand at 804.012 kb on + strand at 804.017 kb on + strand at 804.032 kb on - strand at 804.081 kb on - strand, within Dsui_0798 at 804.150 kb on + strand, within Dsui_0798 at 804.198 kb on - strand, within Dsui_0798 at 804.212 kb on + strand, within Dsui_0798 at 804.222 kb on - strand, within Dsui_0798 at 804.233 kb on - strand, within Dsui_0798 at 804.258 kb on + strand, within Dsui_0798 at 804.264 kb on + strand, within Dsui_0798 at 804.301 kb on + strand, within Dsui_0798 at 804.312 kb on + strand, within Dsui_0798 at 804.320 kb on - strand, within Dsui_0798 at 804.328 kb on + strand, within Dsui_0798 at 804.348 kb on + strand, within Dsui_0798 at 804.381 kb on + strand, within Dsui_0798 at 804.389 kb on - strand, within Dsui_0798 at 804.437 kb on - strand, within Dsui_0798
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 802,098 - +0.3 802,151 + Dsui_0794 0.74 +1.0 802,280 + Dsui_0794 0.81 -0.2 802,283 - Dsui_0794 0.81 -3.8 802,317 + -0.3 802,322 + Dsui_0794 0.83 -1.5 802,391 + Dsui_0794 0.87 +0.5 802,431 + -0.7 802,434 - Dsui_0794 0.89 -3.1 802,486 + -0.2 802,520 + -1.9 802,528 - -0.7 802,539 - -0.4 802,571 - +1.3 802,712 - Dsui_0795 0.16 +0.3 802,727 - Dsui_0795 0.20 -0.0 802,737 - Dsui_0795 0.22 -0.7 802,758 + Dsui_0795 0.28 -1.1 802,758 + Dsui_0795 0.28 -0.2 802,758 + Dsui_0795 0.28 -0.7 802,766 - Dsui_0795 0.30 -2.0 802,766 - Dsui_0795 0.30 -3.0 802,817 - +0.3 802,896 + Dsui_0795 0.66 +1.9 802,959 + Dsui_0795 0.83 +0.6 802,967 - Dsui_0795 0.85 -1.7 803,011 + -1.3 803,096 - -0.7 803,129 + +0.2 803,129 + -0.0 803,129 + +0.1 803,133 - +0.8 803,142 + Dsui_0796 0.12 +0.5 803,314 + Dsui_0796 0.57 -0.1 803,314 + Dsui_0796 0.57 -0.2 803,322 - Dsui_0796 0.60 +1.1 803,334 + Dsui_0796 0.63 -0.2 803,478 - -0.0 803,478 - +0.2 803,483 - -0.4 803,518 - +0.9 803,573 - Dsui_0797 0.27 -0.7 803,622 - Dsui_0797 0.41 -0.2 803,681 + Dsui_0797 0.59 -0.7 803,857 - -0.7 803,876 - -1.0 803,889 - +0.0 803,913 + -1.3 803,921 - -0.7 803,923 + -0.7 803,923 + +0.3 803,931 + -2.3 804,007 + -0.3 804,012 + +0.1 804,012 + -0.7 804,017 + -0.5 804,032 - +0.1 804,081 - Dsui_0798 0.15 +0.3 804,150 + Dsui_0798 0.26 +0.3 804,198 - Dsui_0798 0.33 +0.3 804,212 + Dsui_0798 0.35 +0.7 804,222 - Dsui_0798 0.37 -0.7 804,233 - Dsui_0798 0.39 -0.7 804,258 + Dsui_0798 0.42 +0.2 804,264 + Dsui_0798 0.43 +0.4 804,301 + Dsui_0798 0.49 +0.3 804,312 + Dsui_0798 0.51 +0.8 804,320 - Dsui_0798 0.52 -3.1 804,328 + Dsui_0798 0.53 -0.2 804,348 + Dsui_0798 0.56 +0.1 804,381 + Dsui_0798 0.61 -0.3 804,389 - Dsui_0798 0.62 -0.7 804,437 - Dsui_0798 0.70 -2.5
Or see this region's nucleotide sequence