Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0745 and Dsui_0746 overlap by 13 nucleotides Dsui_0746 and Dsui_0747 are separated by 94 nucleotides
Dsui_0745: Dsui_0745 - membrane-associated lipoprotein involved in thiamine biosynthesis, at 742,780 to 743,820
_0745
Dsui_0746: Dsui_0746 - glutathione synthetase, at 743,808 to 744,755
_0746
Dsui_0747: Dsui_0747 - glutamate--cysteine ligase, at 744,850 to 746,130
_0747
Position (kb)
743
744
745 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 742.811 kb on - strand at 742.811 kb on - strand at 742.954 kb on - strand, within Dsui_0745 at 742.959 kb on - strand, within Dsui_0745 at 743.025 kb on - strand, within Dsui_0745 at 743.076 kb on + strand at 743.138 kb on - strand, within Dsui_0745 at 743.281 kb on + strand, within Dsui_0745 at 743.771 kb on + strand at 743.863 kb on - strand at 743.955 kb on - strand, within Dsui_0746 at 744.017 kb on + strand, within Dsui_0746 at 744.104 kb on - strand, within Dsui_0746 at 744.137 kb on - strand, within Dsui_0746 at 744.152 kb on - strand, within Dsui_0746 at 744.165 kb on + strand, within Dsui_0746 at 744.192 kb on + strand, within Dsui_0746 at 744.245 kb on + strand at 744.325 kb on - strand, within Dsui_0746 at 744.350 kb on - strand, within Dsui_0746 at 744.358 kb on - strand, within Dsui_0746 at 744.403 kb on + strand, within Dsui_0746 at 744.436 kb on + strand, within Dsui_0746 at 744.438 kb on - strand, within Dsui_0746 at 744.455 kb on + strand at 744.459 kb on + strand at 744.471 kb on - strand, within Dsui_0746 at 744.545 kb on - strand, within Dsui_0746 at 744.626 kb on + strand, within Dsui_0746 at 744.626 kb on + strand, within Dsui_0746 at 744.654 kb on + strand, within Dsui_0746 at 744.712 kb on + strand at 744.712 kb on + strand at 744.712 kb on + strand at 744.717 kb on + strand at 744.720 kb on - strand at 744.722 kb on + strand at 744.722 kb on + strand at 744.803 kb on + strand at 744.829 kb on - strand at 744.840 kb on + strand at 744.955 kb on - strand at 744.999 kb on - strand, within Dsui_0747 at 745.019 kb on - strand, within Dsui_0747 at 745.143 kb on - strand, within Dsui_0747 at 745.178 kb on - strand, within Dsui_0747 at 745.189 kb on - strand, within Dsui_0747 at 745.607 kb on - strand, within Dsui_0747 at 745.614 kb on + strand at 745.683 kb on + strand, within Dsui_0747 at 745.701 kb on + strand, within Dsui_0747 at 745.709 kb on - strand, within Dsui_0747
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 742,811 - -0.0 742,811 - -0.4 742,954 - Dsui_0745 0.17 -0.2 742,959 - Dsui_0745 0.17 +0.8 743,025 - Dsui_0745 0.24 -0.8 743,076 + +0.2 743,138 - Dsui_0745 0.34 +0.1 743,281 + Dsui_0745 0.48 -0.8 743,771 + -1.4 743,863 - +0.6 743,955 - Dsui_0746 0.16 -0.4 744,017 + Dsui_0746 0.22 -2.9 744,104 - Dsui_0746 0.31 +0.3 744,137 - Dsui_0746 0.35 +0.6 744,152 - Dsui_0746 0.36 +0.6 744,165 + Dsui_0746 0.38 -0.8 744,192 + Dsui_0746 0.41 +0.2 744,245 + -0.8 744,325 - Dsui_0746 0.55 +0.6 744,350 - Dsui_0746 0.57 +0.7 744,358 - Dsui_0746 0.58 +0.5 744,403 + Dsui_0746 0.63 -1.3 744,436 + Dsui_0746 0.66 -1.3 744,438 - Dsui_0746 0.66 +0.4 744,455 + +0.2 744,459 + +0.2 744,471 - Dsui_0746 0.70 +0.5 744,545 - Dsui_0746 0.78 +0.2 744,626 + Dsui_0746 0.86 -0.8 744,626 + Dsui_0746 0.86 -0.8 744,654 + Dsui_0746 0.89 +0.2 744,712 + -2.6 744,712 + +0.2 744,712 + -0.8 744,717 + -2.1 744,720 - +0.1 744,722 + -2.6 744,722 + -0.8 744,803 + +0.2 744,829 - +0.1 744,840 + +0.2 744,955 - +0.1 744,999 - Dsui_0747 0.12 +1.0 745,019 - Dsui_0747 0.13 +0.1 745,143 - Dsui_0747 0.23 -0.0 745,178 - Dsui_0747 0.26 +0.5 745,189 - Dsui_0747 0.26 +0.1 745,607 - Dsui_0747 0.59 -0.6 745,614 + -0.8 745,683 + Dsui_0747 0.65 -2.8 745,701 + Dsui_0747 0.66 -1.3 745,709 - Dsui_0747 0.67 +0.3
Or see this region's nucleotide sequence