Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0719 and Dsui_0720 are separated by 60 nucleotides Dsui_0720 and Dsui_0721 are separated by 90 nucleotides Dsui_0721 and Dsui_0722 overlap by 4 nucleotides Dsui_0722 and Dsui_0723 are separated by 427 nucleotides
Dsui_0719: Dsui_0719 - uncharacterized protein involved in tolerance to divalent cations, at 712,936 to 713,277
_0719
Dsui_0720: Dsui_0720 - ABC-2 type transporter, NodJ family, at 713,338 to 714,138
_0720
Dsui_0721: Dsui_0721 - radical SAM additional 4Fe4S-binding domain protein, at 714,229 to 715,599
_0721
Dsui_0722: Dsui_0722 - hypothetical protein, at 715,596 to 715,766
_0722
Dsui_0723: Dsui_0723 - chemotaxis signal transduction protein, at 716,194 to 718,851
_0723
Position (kb)
714
715
716 Strain fitness (log2 ratio)
-2
-1
0
1 at 713.270 kb on - strand at 713.426 kb on + strand, within Dsui_0720 at 713.482 kb on - strand, within Dsui_0720 at 713.509 kb on + strand, within Dsui_0720 at 713.517 kb on - strand, within Dsui_0720 at 713.553 kb on + strand, within Dsui_0720 at 713.577 kb on + strand, within Dsui_0720 at 713.585 kb on - strand, within Dsui_0720 at 713.585 kb on - strand, within Dsui_0720 at 713.639 kb on - strand, within Dsui_0720 at 713.639 kb on - strand, within Dsui_0720 at 713.655 kb on - strand, within Dsui_0720 at 713.740 kb on + strand, within Dsui_0720 at 713.765 kb on + strand at 713.773 kb on - strand, within Dsui_0720 at 713.939 kb on - strand, within Dsui_0720 at 714.024 kb on - strand, within Dsui_0720 at 714.029 kb on + strand at 714.199 kb on - strand at 714.261 kb on + strand at 714.317 kb on - strand at 714.325 kb on + strand at 714.353 kb on + strand at 714.449 kb on + strand, within Dsui_0721 at 714.452 kb on - strand, within Dsui_0721 at 714.467 kb on - strand, within Dsui_0721 at 714.492 kb on + strand, within Dsui_0721 at 714.523 kb on - strand, within Dsui_0721 at 714.612 kb on - strand, within Dsui_0721 at 714.696 kb on + strand, within Dsui_0721 at 714.851 kb on - strand, within Dsui_0721 at 714.883 kb on + strand at 714.899 kb on + strand, within Dsui_0721 at 714.931 kb on + strand, within Dsui_0721 at 714.940 kb on - strand, within Dsui_0721 at 715.059 kb on + strand, within Dsui_0721 at 715.087 kb on - strand, within Dsui_0721 at 715.158 kb on + strand, within Dsui_0721 at 715.265 kb on + strand, within Dsui_0721 at 715.384 kb on - strand, within Dsui_0721 at 715.392 kb on - strand, within Dsui_0721 at 715.587 kb on - strand at 715.683 kb on + strand at 715.714 kb on - strand at 715.772 kb on - strand at 715.866 kb on - strand at 715.971 kb on - strand at 716.079 kb on + strand at 716.087 kb on - strand at 716.125 kb on + strand at 716.478 kb on - strand, within Dsui_0723 at 716.496 kb on + strand at 716.564 kb on - strand, within Dsui_0723
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 713,270 - -0.1 713,426 + Dsui_0720 0.11 +0.3 713,482 - Dsui_0720 0.18 +0.4 713,509 + Dsui_0720 0.21 -0.7 713,517 - Dsui_0720 0.22 +0.2 713,553 + Dsui_0720 0.27 -0.7 713,577 + Dsui_0720 0.30 +0.3 713,585 - Dsui_0720 0.31 +0.0 713,585 - Dsui_0720 0.31 +0.0 713,639 - Dsui_0720 0.38 +0.5 713,639 - Dsui_0720 0.38 -0.0 713,655 - Dsui_0720 0.40 +0.2 713,740 + Dsui_0720 0.50 +0.3 713,765 + +0.3 713,773 - Dsui_0720 0.54 +0.3 713,939 - Dsui_0720 0.75 +0.0 714,024 - Dsui_0720 0.86 +0.2 714,029 + +0.3 714,199 - -1.3 714,261 + -1.3 714,317 - +0.3 714,325 + +0.3 714,353 + +0.3 714,449 + Dsui_0721 0.16 -1.7 714,452 - Dsui_0721 0.16 -1.7 714,467 - Dsui_0721 0.17 -1.7 714,492 + Dsui_0721 0.19 -1.7 714,523 - Dsui_0721 0.21 -1.3 714,612 - Dsui_0721 0.28 -1.3 714,696 + Dsui_0721 0.34 +0.3 714,851 - Dsui_0721 0.45 +0.3 714,883 + -0.7 714,899 + Dsui_0721 0.49 -0.7 714,931 + Dsui_0721 0.51 -0.7 714,940 - Dsui_0721 0.52 -0.7 715,059 + Dsui_0721 0.61 +0.3 715,087 - Dsui_0721 0.63 +0.3 715,158 + Dsui_0721 0.68 -1.3 715,265 + Dsui_0721 0.76 -2.3 715,384 - Dsui_0721 0.84 -2.1 715,392 - Dsui_0721 0.85 +0.3 715,587 - -0.7 715,683 + +0.3 715,714 - +0.3 715,772 - +0.3 715,866 - -0.3 715,971 - -1.7 716,079 + +0.4 716,087 - -0.7 716,125 + -1.3 716,478 - Dsui_0723 0.11 -1.8 716,496 + -0.8 716,564 - Dsui_0723 0.14 -1.3
Or see this region's nucleotide sequence