Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0625 and Dsui_0626 are separated by 2 nucleotides Dsui_0626 and Dsui_0627 overlap by 8 nucleotides Dsui_0627 and Dsui_0628 overlap by 1 nucleotides
Dsui_0625: Dsui_0625 - putative metal-sulfur cluster biosynthetic enzyme, at 619,613 to 619,924
_0625
Dsui_0626: Dsui_0626 - ABC-type branched-chain amino acid transport systems, ATPase component, at 619,927 to 620,643
_0626
Dsui_0627: Dsui_0627 - ABC-type branched-chain amino acid transport systems, ATPase component, at 620,636 to 621,439
_0627
Dsui_0628: Dsui_0628 - ABC-type branched-chain amino acid transport system, permease component, at 621,439 to 622,515
_0628
Position (kb) 620
621
622 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 619.660 kb on - strand, within Dsui_0625 at 619.693 kb on + strand, within Dsui_0625 at 619.701 kb on - strand, within Dsui_0625 at 619.752 kb on - strand, within Dsui_0625 at 619.827 kb on + strand, within Dsui_0625 at 619.835 kb on - strand, within Dsui_0625 at 619.856 kb on - strand, within Dsui_0625 at 619.891 kb on - strand, within Dsui_0625 at 619.896 kb on - strand at 619.946 kb on + strand at 619.987 kb on + strand at 620.177 kb on - strand, within Dsui_0626 at 620.177 kb on - strand, within Dsui_0626 at 620.310 kb on - strand, within Dsui_0626 at 620.336 kb on + strand, within Dsui_0626 at 620.496 kb on - strand, within Dsui_0626 at 620.502 kb on + strand, within Dsui_0626 at 620.639 kb on + strand at 620.642 kb on - strand at 620.820 kb on + strand at 620.972 kb on - strand, within Dsui_0627 at 620.972 kb on - strand, within Dsui_0627 at 621.116 kb on - strand, within Dsui_0627 at 621.229 kb on + strand, within Dsui_0627 at 621.375 kb on + strand at 621.383 kb on - strand at 621.617 kb on + strand, within Dsui_0628 at 621.617 kb on + strand, within Dsui_0628 at 621.639 kb on - strand, within Dsui_0628 at 621.689 kb on + strand, within Dsui_0628 at 621.828 kb on + strand, within Dsui_0628 at 621.858 kb on + strand, within Dsui_0628 at 622.029 kb on + strand, within Dsui_0628 at 622.166 kb on + strand, within Dsui_0628 at 622.261 kb on + strand at 622.278 kb on + strand, within Dsui_0628 at 622.301 kb on - strand, within Dsui_0628 at 622.413 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 619,660 - Dsui_0625 0.15 -0.5 619,693 + Dsui_0625 0.26 +0.2 619,701 - Dsui_0625 0.28 +0.2 619,752 - Dsui_0625 0.45 -0.3 619,827 + Dsui_0625 0.69 -3.0 619,835 - Dsui_0625 0.71 +0.1 619,856 - Dsui_0625 0.78 -0.1 619,891 - Dsui_0625 0.89 -0.0 619,896 - -0.4 619,946 + -0.8 619,987 + -0.8 620,177 - Dsui_0626 0.35 +0.1 620,177 - Dsui_0626 0.35 +0.3 620,310 - Dsui_0626 0.53 -0.1 620,336 + Dsui_0626 0.57 -1.4 620,496 - Dsui_0626 0.79 +0.5 620,502 + Dsui_0626 0.80 -0.8 620,639 + -1.4 620,642 - -0.0 620,820 + +0.2 620,972 - Dsui_0627 0.42 -0.1 620,972 - Dsui_0627 0.42 -0.5 621,116 - Dsui_0627 0.60 -0.5 621,229 + Dsui_0627 0.74 -0.8 621,375 + -3.0 621,383 - -0.0 621,617 + Dsui_0628 0.17 +0.2 621,617 + Dsui_0628 0.17 +0.2 621,639 - Dsui_0628 0.19 -1.0 621,689 + Dsui_0628 0.23 -4.3 621,828 + Dsui_0628 0.36 +0.2 621,858 + Dsui_0628 0.39 -0.8 622,029 + Dsui_0628 0.55 -0.8 622,166 + Dsui_0628 0.68 -1.8 622,261 + +0.2 622,278 + Dsui_0628 0.78 -1.4 622,301 - Dsui_0628 0.80 -0.3 622,413 + -0.8
Or see this region's nucleotide sequence