Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0617 and Dsui_0618 are separated by 10 nucleotides Dsui_0618 and Dsui_0619 are separated by 52 nucleotides Dsui_0619 and Dsui_0620 are separated by 96 nucleotides
Dsui_0617: Dsui_0617 - hypothetical protein, at 611,693 to 612,697
_0617
Dsui_0618: Dsui_0618 - putative lipoprotein involved in nitrous oxide reduction, at 612,708 to 613,274
_0618
Dsui_0619: Dsui_0619 - TonB-dependent siderophore receptor, at 613,327 to 615,690
_0619
Dsui_0620: Dsui_0620 - Fe2+-dicitrate sensor, membrane component, at 615,787 to 616,710
_0620
Position (kb) 613
614
615
616 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 612.422 kb on - strand, within Dsui_0617 at 612.578 kb on - strand at 612.603 kb on + strand at 612.675 kb on + strand at 612.746 kb on + strand at 612.810 kb on - strand, within Dsui_0618 at 612.904 kb on - strand, within Dsui_0618 at 612.916 kb on + strand, within Dsui_0618 at 612.954 kb on - strand, within Dsui_0618 at 613.094 kb on + strand, within Dsui_0618 at 613.161 kb on + strand, within Dsui_0618 at 613.259 kb on + strand at 613.259 kb on + strand at 613.259 kb on + strand at 613.277 kb on - strand at 613.290 kb on - strand at 613.401 kb on + strand at 613.401 kb on + strand at 613.569 kb on + strand at 613.569 kb on + strand, within Dsui_0619 at 613.575 kb on + strand, within Dsui_0619 at 613.577 kb on - strand, within Dsui_0619 at 613.631 kb on - strand, within Dsui_0619 at 613.631 kb on - strand, within Dsui_0619 at 613.631 kb on - strand, within Dsui_0619 at 613.730 kb on - strand at 613.730 kb on - strand, within Dsui_0619 at 613.768 kb on - strand, within Dsui_0619 at 613.825 kb on - strand, within Dsui_0619 at 613.825 kb on - strand, within Dsui_0619 at 613.857 kb on + strand at 613.867 kb on + strand, within Dsui_0619 at 613.916 kb on + strand, within Dsui_0619 at 613.941 kb on + strand at 613.969 kb on - strand at 614.051 kb on + strand, within Dsui_0619 at 614.326 kb on + strand, within Dsui_0619 at 614.326 kb on + strand, within Dsui_0619 at 614.334 kb on - strand at 614.334 kb on - strand, within Dsui_0619 at 614.335 kb on - strand, within Dsui_0619 at 614.434 kb on - strand, within Dsui_0619 at 614.454 kb on - strand at 614.481 kb on + strand at 614.489 kb on - strand, within Dsui_0619 at 614.613 kb on - strand at 614.613 kb on - strand, within Dsui_0619 at 614.744 kb on - strand, within Dsui_0619 at 615.051 kb on - strand, within Dsui_0619 at 615.073 kb on + strand, within Dsui_0619 at 615.125 kb on - strand, within Dsui_0619 at 615.176 kb on - strand at 615.194 kb on - strand, within Dsui_0619 at 615.418 kb on + strand, within Dsui_0619 at 615.501 kb on - strand at 615.509 kb on - strand at 615.600 kb on - strand at 615.623 kb on + strand at 615.623 kb on + strand at 615.696 kb on + strand at 615.708 kb on + strand at 615.813 kb on + strand at 615.823 kb on + strand at 615.973 kb on - strand, within Dsui_0620 at 615.983 kb on - strand, within Dsui_0620 at 615.988 kb on + strand at 615.990 kb on - strand at 616.067 kb on + strand, within Dsui_0620 at 616.072 kb on + strand, within Dsui_0620 at 616.080 kb on - strand, within Dsui_0620 at 616.137 kb on - strand, within Dsui_0620 at 616.179 kb on - strand, within Dsui_0620 at 616.226 kb on - strand, within Dsui_0620 at 616.231 kb on + strand, within Dsui_0620 at 616.290 kb on + strand, within Dsui_0620 at 616.533 kb on + strand, within Dsui_0620 at 616.681 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 612,422 - Dsui_0617 0.73 -2.1 612,578 - -0.8 612,603 + +0.2 612,675 + -0.3 612,746 + -2.5 612,810 - Dsui_0618 0.18 -2.1 612,904 - Dsui_0618 0.35 -0.4 612,916 + Dsui_0618 0.37 -1.8 612,954 - Dsui_0618 0.43 -0.8 613,094 + Dsui_0618 0.68 +0.2 613,161 + Dsui_0618 0.80 -3.6 613,259 + -1.8 613,259 + -2.1 613,259 + +0.2 613,277 - +0.2 613,290 - +0.2 613,401 + -1.4 613,401 + -1.8 613,569 + -0.8 613,569 + Dsui_0619 0.10 -2.1 613,575 + Dsui_0619 0.10 +0.2 613,577 - Dsui_0619 0.11 -0.8 613,631 - Dsui_0619 0.13 +0.2 613,631 - Dsui_0619 0.13 +0.2 613,631 - Dsui_0619 0.13 -1.4 613,730 - +0.2 613,730 - Dsui_0619 0.17 -1.4 613,768 - Dsui_0619 0.19 -1.4 613,825 - Dsui_0619 0.21 -1.4 613,825 - Dsui_0619 0.21 -2.8 613,857 + +0.2 613,867 + Dsui_0619 0.23 +0.2 613,916 + Dsui_0619 0.25 -2.1 613,941 + -0.8 613,969 - +0.2 614,051 + Dsui_0619 0.31 -0.8 614,326 + Dsui_0619 0.42 -0.8 614,326 + Dsui_0619 0.42 -1.8 614,334 - +0.2 614,334 - Dsui_0619 0.43 +0.2 614,335 - Dsui_0619 0.43 -2.1 614,434 - Dsui_0619 0.47 -1.4 614,454 - +0.2 614,481 + +0.2 614,489 - Dsui_0619 0.49 +0.2 614,613 - +0.2 614,613 - Dsui_0619 0.54 -1.8 614,744 - Dsui_0619 0.60 -0.8 615,051 - Dsui_0619 0.73 -1.4 615,073 + Dsui_0619 0.74 -1.8 615,125 - Dsui_0619 0.76 -0.8 615,176 - +0.2 615,194 - Dsui_0619 0.79 -1.8 615,418 + Dsui_0619 0.88 +0.2 615,501 - +0.2 615,509 - -1.8 615,600 - -1.8 615,623 + +0.2 615,623 + -1.8 615,696 + -3.0 615,708 + -1.4 615,813 + +0.2 615,823 + -2.1 615,973 - Dsui_0620 0.20 -1.4 615,983 - Dsui_0620 0.21 -1.8 615,988 + +0.2 615,990 - +0.2 616,067 + Dsui_0620 0.30 +0.2 616,072 + Dsui_0620 0.31 -2.6 616,080 - Dsui_0620 0.32 -1.8 616,137 - Dsui_0620 0.38 -2.5 616,179 - Dsui_0620 0.42 -0.8 616,226 - Dsui_0620 0.48 -1.8 616,231 + Dsui_0620 0.48 +0.2 616,290 + Dsui_0620 0.54 -0.8 616,533 + Dsui_0620 0.81 -1.4 616,681 + -0.8
Or see this region's nucleotide sequence