Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0615 and Dsui_0616 are separated by 14 nucleotides Dsui_0616 and Dsui_0617 are separated by 3 nucleotides Dsui_0617 and Dsui_0618 are separated by 10 nucleotides Dsui_0618 and Dsui_0619 are separated by 52 nucleotides
Dsui_0615: Dsui_0615 - ABC-type transport system, involved in lipoprotein release, permease component, at 609,864 to 611,000
_0615
Dsui_0616: Dsui_0616 - ABC-type antimicrobial peptide transport system, ATPase component, at 611,015 to 611,689
_0616
Dsui_0617: Dsui_0617 - hypothetical protein, at 611,693 to 612,697
_0617
Dsui_0618: Dsui_0618 - putative lipoprotein involved in nitrous oxide reduction, at 612,708 to 613,274
_0618
Dsui_0619: Dsui_0619 - TonB-dependent siderophore receptor, at 613,327 to 615,690
_0619
Position (kb) 611
612
613 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 610.858 kb on - strand, within Dsui_0615 at 611.088 kb on - strand at 611.206 kb on + strand, within Dsui_0616 at 611.206 kb on + strand, within Dsui_0616 at 611.214 kb on + strand, within Dsui_0616 at 611.315 kb on + strand, within Dsui_0616 at 611.508 kb on + strand, within Dsui_0616 at 611.618 kb on - strand, within Dsui_0616 at 612.047 kb on - strand, within Dsui_0617 at 612.422 kb on - strand, within Dsui_0617 at 612.578 kb on - strand at 612.603 kb on + strand at 612.675 kb on + strand at 612.746 kb on + strand at 612.810 kb on - strand, within Dsui_0618 at 612.904 kb on - strand, within Dsui_0618 at 612.916 kb on + strand, within Dsui_0618 at 612.954 kb on - strand, within Dsui_0618 at 613.094 kb on + strand, within Dsui_0618 at 613.161 kb on + strand, within Dsui_0618 at 613.259 kb on + strand at 613.259 kb on + strand at 613.259 kb on + strand at 613.277 kb on - strand at 613.290 kb on - strand at 613.401 kb on + strand at 613.401 kb on + strand at 613.569 kb on + strand at 613.569 kb on + strand, within Dsui_0619 at 613.575 kb on + strand, within Dsui_0619 at 613.577 kb on - strand, within Dsui_0619 at 613.631 kb on - strand, within Dsui_0619 at 613.631 kb on - strand, within Dsui_0619 at 613.631 kb on - strand, within Dsui_0619
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 610,858 - Dsui_0615 0.87 -3.7 611,088 - +0.2 611,206 + Dsui_0616 0.28 -0.6 611,206 + Dsui_0616 0.28 +0.9 611,214 + Dsui_0616 0.29 +0.0 611,315 + Dsui_0616 0.44 +0.2 611,508 + Dsui_0616 0.73 -1.4 611,618 - Dsui_0616 0.89 -1.8 612,047 - Dsui_0617 0.35 +0.2 612,422 - Dsui_0617 0.73 -2.1 612,578 - -0.8 612,603 + +0.2 612,675 + -0.3 612,746 + -2.5 612,810 - Dsui_0618 0.18 -2.1 612,904 - Dsui_0618 0.35 -0.4 612,916 + Dsui_0618 0.37 -1.8 612,954 - Dsui_0618 0.43 -0.8 613,094 + Dsui_0618 0.68 +0.2 613,161 + Dsui_0618 0.80 -3.6 613,259 + -1.8 613,259 + -2.1 613,259 + +0.2 613,277 - +0.2 613,290 - +0.2 613,401 + -1.4 613,401 + -1.8 613,569 + -0.8 613,569 + Dsui_0619 0.10 -2.1 613,575 + Dsui_0619 0.10 +0.2 613,577 - Dsui_0619 0.11 -0.8 613,631 - Dsui_0619 0.13 +0.2 613,631 - Dsui_0619 0.13 +0.2 613,631 - Dsui_0619 0.13 -1.4
Or see this region's nucleotide sequence