Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0586 and Dsui_0587 are separated by 98 nucleotides Dsui_0587 and Dsui_0588 are separated by 6 nucleotides Dsui_0588 and Dsui_0589 are separated by 11 nucleotides
Dsui_0586: Dsui_0586 - hypothetical protein, at 583,568 to 585,022
_0586
Dsui_0587: Dsui_0587 - hypothetical protein, at 585,121 to 585,429
_0587
Dsui_0588: Dsui_0588 - putative GTPase, G3E family, at 585,436 to 586,500
_0588
Dsui_0589: Dsui_0589 - putative GTPase, G3E family, at 586,512 to 587,507
_0589
Position (kb) 585
586
587 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 584.444 kb on - strand, within Dsui_0586 at 584.461 kb on + strand at 584.499 kb on - strand at 584.574 kb on + strand, within Dsui_0586 at 584.582 kb on - strand, within Dsui_0586 at 584.584 kb on + strand at 584.592 kb on - strand, within Dsui_0586 at 584.618 kb on - strand, within Dsui_0586 at 584.628 kb on - strand, within Dsui_0586 at 584.657 kb on - strand, within Dsui_0586 at 584.696 kb on + strand, within Dsui_0586 at 584.729 kb on - strand, within Dsui_0586 at 584.731 kb on + strand, within Dsui_0586 at 585.011 kb on - strand at 585.024 kb on + strand at 585.032 kb on - strand at 585.095 kb on - strand at 585.209 kb on + strand, within Dsui_0587 at 585.226 kb on + strand, within Dsui_0587 at 585.228 kb on - strand, within Dsui_0587 at 585.602 kb on - strand, within Dsui_0588 at 585.659 kb on + strand at 585.774 kb on - strand, within Dsui_0588 at 586.019 kb on - strand, within Dsui_0588 at 586.024 kb on - strand, within Dsui_0588 at 586.070 kb on - strand, within Dsui_0588 at 586.132 kb on + strand at 586.194 kb on + strand, within Dsui_0588 at 586.330 kb on + strand, within Dsui_0588 at 586.360 kb on + strand at 586.368 kb on - strand, within Dsui_0588 at 586.368 kb on - strand, within Dsui_0588 at 586.448 kb on - strand at 586.576 kb on - strand at 586.615 kb on + strand at 586.623 kb on - strand, within Dsui_0589 at 586.631 kb on + strand, within Dsui_0589 at 586.700 kb on + strand, within Dsui_0589 at 586.734 kb on - strand, within Dsui_0589 at 586.734 kb on - strand, within Dsui_0589 at 586.818 kb on + strand, within Dsui_0589 at 586.821 kb on + strand, within Dsui_0589 at 586.882 kb on - strand, within Dsui_0589 at 587.025 kb on - strand, within Dsui_0589 at 587.109 kb on - strand, within Dsui_0589 at 587.119 kb on - strand, within Dsui_0589 at 587.144 kb on - strand, within Dsui_0589 at 587.166 kb on + strand at 587.203 kb on + strand, within Dsui_0589 at 587.280 kb on - strand, within Dsui_0589 at 587.301 kb on - strand, within Dsui_0589 at 587.366 kb on - strand, within Dsui_0589 at 587.431 kb on - strand at 587.500 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 584,444 - Dsui_0586 0.60 +0.1 584,461 + -0.9 584,499 - +0.1 584,574 + Dsui_0586 0.69 +0.1 584,582 - Dsui_0586 0.70 -0.9 584,584 + -0.9 584,592 - Dsui_0586 0.70 +0.1 584,618 - Dsui_0586 0.72 -1.4 584,628 - Dsui_0586 0.73 +0.1 584,657 - Dsui_0586 0.75 -3.3 584,696 + Dsui_0586 0.78 -1.9 584,729 - Dsui_0586 0.80 +0.1 584,731 + Dsui_0586 0.80 -2.7 585,011 - -0.9 585,024 + +0.1 585,032 - -1.7 585,095 - -0.2 585,209 + Dsui_0587 0.28 -2.2 585,226 + Dsui_0587 0.34 -1.9 585,228 - Dsui_0587 0.35 +0.1 585,602 - Dsui_0588 0.16 -1.4 585,659 + -0.9 585,774 - Dsui_0588 0.32 -0.6 586,019 - Dsui_0588 0.55 -1.6 586,024 - Dsui_0588 0.55 -0.5 586,070 - Dsui_0588 0.60 +0.1 586,132 + +0.1 586,194 + Dsui_0588 0.71 +0.1 586,330 + Dsui_0588 0.84 -1.4 586,360 + -1.4 586,368 - Dsui_0588 0.88 -0.4 586,368 - Dsui_0588 0.88 -0.6 586,448 - +0.1 586,576 - +0.1 586,615 + -0.9 586,623 - Dsui_0589 0.11 -0.4 586,631 + Dsui_0589 0.12 -2.2 586,700 + Dsui_0589 0.19 -0.9 586,734 - Dsui_0589 0.22 -1.0 586,734 - Dsui_0589 0.22 -0.6 586,818 + Dsui_0589 0.31 +0.1 586,821 + Dsui_0589 0.31 +0.1 586,882 - Dsui_0589 0.37 -0.5 587,025 - Dsui_0589 0.52 -0.9 587,109 - Dsui_0589 0.60 +0.1 587,119 - Dsui_0589 0.61 -0.2 587,144 - Dsui_0589 0.63 -0.6 587,166 + +0.1 587,203 + Dsui_0589 0.69 -1.9 587,280 - Dsui_0589 0.77 -0.4 587,301 - Dsui_0589 0.79 -0.9 587,366 - Dsui_0589 0.86 +0.4 587,431 - -0.4 587,500 - -0.4
Or see this region's nucleotide sequence