Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0554 and Dsui_0555 are separated by 8 nucleotides Dsui_0555 and Dsui_0556 are separated by 21 nucleotides Dsui_0556 and Dsui_0557 are separated by 26 nucleotides Dsui_0557 and Dsui_0558 overlap by 33 nucleotides
Dsui_0554: Dsui_0554 - uncharacterized conserved small protein containing a coiled-coil domain, at 557,198 to 557,395
_0554
Dsui_0555: Dsui_0555 - hypothetical protein, at 557,404 to 557,784
_0555
Dsui_0556: Dsui_0556 - ferredoxin III, nif-specific, at 557,806 to 558,105
_0556
Dsui_0557: Dsui_0557 - NifQ, at 558,132 to 558,557
_0557
Dsui_0558: Dsui_0558 - tetratricopeptide repeat protein, at 558,525 to 559,973
_0558
Position (kb) 558
559 Strain fitness (log2 ratio) -2
-1
0
1 at 557.168 kb on - strand at 557.254 kb on - strand, within Dsui_0554 at 557.259 kb on - strand, within Dsui_0554 at 557.266 kb on - strand, within Dsui_0554 at 557.335 kb on - strand, within Dsui_0554 at 557.534 kb on - strand, within Dsui_0555 at 557.641 kb on + strand, within Dsui_0555 at 557.753 kb on + strand at 557.770 kb on + strand at 557.829 kb on + strand at 557.848 kb on + strand, within Dsui_0556 at 558.041 kb on + strand, within Dsui_0556 at 558.083 kb on + strand at 558.247 kb on - strand, within Dsui_0557 at 558.323 kb on - strand, within Dsui_0557 at 558.393 kb on + strand, within Dsui_0557 at 558.441 kb on + strand, within Dsui_0557 at 558.477 kb on - strand, within Dsui_0557 at 558.540 kb on - strand at 558.581 kb on - strand at 558.581 kb on - strand at 558.629 kb on + strand at 559.118 kb on - strand, within Dsui_0558 at 559.172 kb on - strand, within Dsui_0558 at 559.224 kb on + strand, within Dsui_0558 at 559.284 kb on + strand, within Dsui_0558 at 559.321 kb on - strand, within Dsui_0558 at 559.362 kb on - strand, within Dsui_0558 at 559.368 kb on - strand, within Dsui_0558 at 559.535 kb on + strand at 559.543 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 557,168 - -0.9 557,254 - Dsui_0554 0.28 -0.9 557,259 - Dsui_0554 0.31 +0.1 557,266 - Dsui_0554 0.34 -1.9 557,335 - Dsui_0554 0.69 -1.4 557,534 - Dsui_0555 0.34 -1.9 557,641 + Dsui_0555 0.62 -0.9 557,753 + -0.9 557,770 + +0.1 557,829 + -0.9 557,848 + Dsui_0556 0.14 -0.9 558,041 + Dsui_0556 0.78 +0.1 558,083 + -0.9 558,247 - Dsui_0557 0.27 -1.4 558,323 - Dsui_0557 0.45 +0.1 558,393 + Dsui_0557 0.61 -1.9 558,441 + Dsui_0557 0.73 -0.9 558,477 - Dsui_0557 0.81 +0.1 558,540 - +0.1 558,581 - -0.9 558,581 - +0.1 558,629 + -2.7 559,118 - Dsui_0558 0.41 -1.9 559,172 - Dsui_0558 0.45 +0.1 559,224 + Dsui_0558 0.48 +0.1 559,284 + Dsui_0558 0.52 -2.7 559,321 - Dsui_0558 0.55 -1.9 559,362 - Dsui_0558 0.58 -1.9 559,368 - Dsui_0558 0.58 -1.4 559,535 + -1.4 559,543 - -0.4
Or see this region's nucleotide sequence