Strain Fitness in Dechlorosoma suillum PS around Dsui_0529

Experiment: ALP with perchlorate 3 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0527 and Dsui_0528 overlap by 4 nucleotidesDsui_0528 and Dsui_0529 are separated by 485 nucleotidesDsui_0529 and Dsui_0530 are separated by 23 nucleotides Dsui_0527: Dsui_0527 - hypothetical protein, at 532,957 to 533,286 _0527 Dsui_0528: Dsui_0528 - hypothetical protein, at 533,283 to 533,486 _0528 Dsui_0529: Dsui_0529 - outer membrane cobalamin receptor protein, at 533,972 to 535,936 _0529 Dsui_0530: Dsui_0530 - ABC-type Fe3+-siderophore transport system, permease component, at 535,960 to 536,940 _0530 Position (kb) 533 534 535 536Strain fitness (log2 ratio) -2 -1 0 1at 532.978 kb on + strandat 533.028 kb on + strand, within Dsui_0527at 533.068 kb on + strand, within Dsui_0527at 533.068 kb on + strand, within Dsui_0527at 533.147 kb on + strand, within Dsui_0527at 533.152 kb on + strand, within Dsui_0527at 533.155 kb on - strand, within Dsui_0527at 533.307 kb on - strand, within Dsui_0528at 533.489 kb on - strandat 533.520 kb on + strandat 533.526 kb on + strandat 533.526 kb on - strandat 533.534 kb on - strandat 533.724 kb on - strandat 533.738 kb on + strandat 533.855 kb on + strandat 533.962 kb on + strandat 533.970 kb on - strandat 533.977 kb on - strandat 534.008 kb on + strandat 534.260 kb on - strandat 534.279 kb on + strand, within Dsui_0529at 534.336 kb on + strand, within Dsui_0529at 534.367 kb on + strand, within Dsui_0529at 534.584 kb on + strand, within Dsui_0529at 534.637 kb on - strand, within Dsui_0529at 534.646 kb on + strand, within Dsui_0529at 534.684 kb on + strand, within Dsui_0529at 534.692 kb on - strand, within Dsui_0529at 534.759 kb on - strand, within Dsui_0529at 534.797 kb on + strand, within Dsui_0529at 534.804 kb on - strandat 534.831 kb on - strand, within Dsui_0529at 534.915 kb on + strand, within Dsui_0529at 534.923 kb on - strandat 534.986 kb on - strand, within Dsui_0529at 535.008 kb on + strand, within Dsui_0529at 535.023 kb on + strand, within Dsui_0529at 535.056 kb on + strand, within Dsui_0529at 535.056 kb on + strand, within Dsui_0529at 535.081 kb on + strand, within Dsui_0529at 535.098 kb on + strand, within Dsui_0529at 535.188 kb on + strand, within Dsui_0529at 535.217 kb on - strand, within Dsui_0529at 535.220 kb on + strand, within Dsui_0529at 535.271 kb on + strand, within Dsui_0529at 535.285 kb on - strand, within Dsui_0529at 535.306 kb on - strandat 535.405 kb on - strand, within Dsui_0529at 535.423 kb on + strand, within Dsui_0529at 535.428 kb on + strand, within Dsui_0529at 535.433 kb on + strand, within Dsui_0529at 535.441 kb on - strand, within Dsui_0529at 535.661 kb on - strand, within Dsui_0529at 535.678 kb on + strand, within Dsui_0529at 535.693 kb on - strand, within Dsui_0529at 535.764 kb on + strandat 535.847 kb on - strandat 535.889 kb on - strandat 535.889 kb on - strandat 535.943 kb on + strandat 536.023 kb on - strandat 536.119 kb on + strand, within Dsui_0530at 536.180 kb on - strand, within Dsui_0530at 536.236 kb on - strand, within Dsui_0530at 536.241 kb on - strand, within Dsui_0530at 536.361 kb on + strand, within Dsui_0530at 536.451 kb on - strandat 536.467 kb on + strand, within Dsui_0530at 536.519 kb on - strand, within Dsui_0530at 536.620 kb on + strand, within Dsui_0530at 536.628 kb on - strand, within Dsui_0530at 536.659 kb on - strand, within Dsui_0530at 536.902 kb on + strandat 536.917 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM
remove
532,978 + -2.2
533,028 + Dsui_0527 0.22 -0.9
533,068 + Dsui_0527 0.34 -1.4
533,068 + Dsui_0527 0.34 +0.1
533,147 + Dsui_0527 0.58 -1.4
533,152 + Dsui_0527 0.59 +0.1
533,155 - Dsui_0527 0.60 -0.3
533,307 - Dsui_0528 0.12 +0.0
533,489 - -0.1
533,520 + +0.1
533,526 + +0.1
533,526 - -0.9
533,534 - +0.1
533,724 - -0.9
533,738 + -0.1
533,855 + -0.2
533,962 + -0.0
533,970 - -1.4
533,977 - +0.1
534,008 + +0.6
534,260 - -0.9
534,279 + Dsui_0529 0.16 +0.1
534,336 + Dsui_0529 0.19 +0.1
534,367 + Dsui_0529 0.20 +0.5
534,584 + Dsui_0529 0.31 -0.4
534,637 - Dsui_0529 0.34 -0.9
534,646 + Dsui_0529 0.34 -0.3
534,684 + Dsui_0529 0.36 +0.0
534,692 - Dsui_0529 0.37 +0.1
534,759 - Dsui_0529 0.40 -1.9
534,797 + Dsui_0529 0.42 -0.7
534,804 - +0.1
534,831 - Dsui_0529 0.44 -1.4
534,915 + Dsui_0529 0.48 -0.3
534,923 - +0.1
534,986 - Dsui_0529 0.52 -1.9
535,008 + Dsui_0529 0.53 -0.7
535,023 + Dsui_0529 0.53 +0.2
535,056 + Dsui_0529 0.55 -0.1
535,056 + Dsui_0529 0.55 +0.2
535,081 + Dsui_0529 0.56 -0.9
535,098 + Dsui_0529 0.57 +0.1
535,188 + Dsui_0529 0.62 -0.6
535,217 - Dsui_0529 0.63 +0.1
535,220 + Dsui_0529 0.64 -1.0
535,271 + Dsui_0529 0.66 -0.4
535,285 - Dsui_0529 0.67 +0.1
535,306 - +0.1
535,405 - Dsui_0529 0.73 +0.1
535,423 + Dsui_0529 0.74 -0.9
535,428 + Dsui_0529 0.74 +0.1
535,433 + Dsui_0529 0.74 +0.1
535,441 - Dsui_0529 0.75 -0.9
535,661 - Dsui_0529 0.86 -1.9
535,678 + Dsui_0529 0.87 -0.2
535,693 - Dsui_0529 0.88 -2.6
535,764 + -0.4
535,847 - -2.2
535,889 - -1.4
535,889 - +0.1
535,943 + -0.1
536,023 - +0.1
536,119 + Dsui_0530 0.16 -0.7
536,180 - Dsui_0530 0.22 -0.9
536,236 - Dsui_0530 0.28 -2.4
536,241 - Dsui_0530 0.29 -2.4
536,361 + Dsui_0530 0.41 -0.9
536,451 - -0.9
536,467 + Dsui_0530 0.52 -0.3
536,519 - Dsui_0530 0.57 -2.2
536,620 + Dsui_0530 0.67 -0.0
536,628 - Dsui_0530 0.68 +0.1
536,659 - Dsui_0530 0.71 +0.1
536,902 + -0.5
536,917 + +0.1

Or see this region's nucleotide sequence