Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0510 and Dsui_0511 are separated by 10 nucleotides Dsui_0511 and Dsui_0512 are separated by 318 nucleotides Dsui_0512 and Dsui_0513 are separated by 80 nucleotides
Dsui_0510: Dsui_0510 - ferredoxin-type protein, NapH/MauN family, at 514,661 to 515,581
_0510
Dsui_0511: Dsui_0511 - nitrate reductase cytochrome c-type subunit, at 515,592 to 516,068
_0511
Dsui_0512: Dsui_0512 - Methylmalonyl-CoA epimerase (EC 5.1.99.1) <small>(from data)</small>, at 516,387 to 516,863
_0512
Dsui_0513: Dsui_0513 - diguanylate cyclase (GGDEF) domain-containing protein, at 516,944 to 518,818
_0513
Position (kb) 516
517 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 515.516 kb on + strand at 515.558 kb on + strand at 515.615 kb on - strand at 515.770 kb on + strand, within Dsui_0511 at 515.778 kb on - strand, within Dsui_0511 at 515.868 kb on - strand, within Dsui_0511 at 515.957 kb on + strand, within Dsui_0511 at 516.055 kb on - strand at 516.062 kb on + strand at 516.070 kb on - strand at 516.391 kb on - strand at 516.391 kb on - strand at 516.415 kb on + strand at 516.425 kb on - strand at 516.455 kb on + strand, within Dsui_0512 at 516.463 kb on - strand, within Dsui_0512 at 516.463 kb on - strand, within Dsui_0512 at 516.533 kb on + strand, within Dsui_0512 at 516.555 kb on + strand, within Dsui_0512 at 516.622 kb on + strand, within Dsui_0512 at 516.627 kb on + strand, within Dsui_0512 at 516.627 kb on + strand, within Dsui_0512 at 516.627 kb on + strand, within Dsui_0512 at 516.635 kb on - strand, within Dsui_0512 at 516.662 kb on + strand, within Dsui_0512 at 516.662 kb on + strand, within Dsui_0512 at 516.670 kb on - strand, within Dsui_0512 at 516.670 kb on - strand, within Dsui_0512 at 516.670 kb on - strand, within Dsui_0512 at 516.694 kb on - strand, within Dsui_0512 at 516.727 kb on - strand, within Dsui_0512 at 516.727 kb on - strand, within Dsui_0512 at 516.761 kb on - strand, within Dsui_0512 at 516.790 kb on + strand, within Dsui_0512 at 516.852 kb on + strand at 516.880 kb on - strand at 516.930 kb on - strand at 516.955 kb on + strand at 517.029 kb on - strand at 517.261 kb on + strand, within Dsui_0513 at 517.286 kb on + strand at 517.306 kb on + strand at 517.331 kb on + strand at 517.345 kb on - strand, within Dsui_0513 at 517.366 kb on + strand at 517.407 kb on - strand, within Dsui_0513 at 517.407 kb on - strand, within Dsui_0513 at 517.492 kb on + strand, within Dsui_0513 at 517.492 kb on + strand, within Dsui_0513 at 517.493 kb on + strand, within Dsui_0513 at 517.584 kb on + strand, within Dsui_0513 at 517.622 kb on - strand, within Dsui_0513 at 517.633 kb on + strand, within Dsui_0513 at 517.633 kb on + strand, within Dsui_0513 at 517.641 kb on - strand, within Dsui_0513 at 517.646 kb on - strand, within Dsui_0513 at 517.696 kb on + strand at 517.704 kb on - strand, within Dsui_0513 at 517.724 kb on - strand, within Dsui_0513 at 517.753 kb on + strand, within Dsui_0513 at 517.776 kb on - strand, within Dsui_0513
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 515,516 + +0.1 515,558 + -1.9 515,615 - +0.1 515,770 + Dsui_0511 0.37 -0.9 515,778 - Dsui_0511 0.39 -0.9 515,868 - Dsui_0511 0.58 +0.1 515,957 + Dsui_0511 0.77 -1.5 516,055 - +0.1 516,062 + -4.3 516,070 - -1.5 516,391 - -2.5 516,391 - +0.1 516,415 + +0.1 516,425 - -0.9 516,455 + Dsui_0512 0.14 -0.9 516,463 - Dsui_0512 0.16 -1.5 516,463 - Dsui_0512 0.16 +0.1 516,533 + Dsui_0512 0.31 +2.1 516,555 + Dsui_0512 0.35 -0.3 516,622 + Dsui_0512 0.49 +0.1 516,627 + Dsui_0512 0.50 -0.8 516,627 + Dsui_0512 0.50 +0.5 516,627 + Dsui_0512 0.50 -0.2 516,635 - Dsui_0512 0.52 -0.9 516,662 + Dsui_0512 0.58 -1.3 516,662 + Dsui_0512 0.58 -0.2 516,670 - Dsui_0512 0.59 -1.5 516,670 - Dsui_0512 0.59 +0.1 516,670 - Dsui_0512 0.59 -1.5 516,694 - Dsui_0512 0.64 +0.1 516,727 - Dsui_0512 0.71 -2.7 516,727 - Dsui_0512 0.71 -2.5 516,761 - Dsui_0512 0.78 -0.9 516,790 + Dsui_0512 0.84 -2.7 516,852 + -1.0 516,880 - -1.5 516,930 - -0.8 516,955 + +0.1 517,029 - +1.1 517,261 + Dsui_0513 0.17 -1.9 517,286 + +0.1 517,306 + +0.1 517,331 + +0.1 517,345 - Dsui_0513 0.21 -0.9 517,366 + +0.1 517,407 - Dsui_0513 0.25 -1.1 517,407 - Dsui_0513 0.25 +0.1 517,492 + Dsui_0513 0.29 -2.5 517,492 + Dsui_0513 0.29 +0.1 517,493 + Dsui_0513 0.29 -1.9 517,584 + Dsui_0513 0.34 -0.9 517,622 - Dsui_0513 0.36 -1.5 517,633 + Dsui_0513 0.37 -2.2 517,633 + Dsui_0513 0.37 -2.5 517,641 - Dsui_0513 0.37 -3.7 517,646 - Dsui_0513 0.37 -0.9 517,696 + +0.1 517,704 - Dsui_0513 0.41 -1.9 517,724 - Dsui_0513 0.42 -2.2 517,753 + Dsui_0513 0.43 -0.9 517,776 - Dsui_0513 0.44 -3.5
Or see this region's nucleotide sequence