Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0509 and Dsui_0510 overlap by 4 nucleotides Dsui_0510 and Dsui_0511 are separated by 10 nucleotides Dsui_0511 and Dsui_0512 are separated by 318 nucleotides
Dsui_0509: Dsui_0509 - MauM/NapG family ferredoxin-type protein, at 513,684 to 514,664
_0509
Dsui_0510: Dsui_0510 - ferredoxin-type protein, NapH/MauN family, at 514,661 to 515,581
_0510
Dsui_0511: Dsui_0511 - nitrate reductase cytochrome c-type subunit, at 515,592 to 516,068
_0511
Dsui_0512: Dsui_0512 - Methylmalonyl-CoA epimerase (EC 5.1.99.1) <small>(from data)</small>, at 516,387 to 516,863
_0512
Position (kb) 514
515
516 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 513.786 kb on + strand, within Dsui_0509 at 513.963 kb on + strand, within Dsui_0509 at 513.999 kb on - strand, within Dsui_0509 at 514.085 kb on + strand, within Dsui_0509 at 514.095 kb on + strand, within Dsui_0509 at 514.098 kb on - strand, within Dsui_0509 at 514.103 kb on - strand at 514.109 kb on + strand, within Dsui_0509 at 514.166 kb on + strand, within Dsui_0509 at 514.195 kb on + strand, within Dsui_0509 at 514.195 kb on + strand, within Dsui_0509 at 514.203 kb on - strand, within Dsui_0509 at 514.203 kb on - strand, within Dsui_0509 at 514.214 kb on + strand, within Dsui_0509 at 514.263 kb on - strand, within Dsui_0509 at 514.363 kb on - strand at 514.425 kb on - strand, within Dsui_0509 at 514.456 kb on - strand, within Dsui_0509 at 514.474 kb on + strand at 514.549 kb on + strand, within Dsui_0509 at 514.585 kb on + strand at 514.827 kb on - strand at 514.840 kb on - strand at 514.854 kb on - strand, within Dsui_0510 at 514.905 kb on + strand, within Dsui_0510 at 514.971 kb on + strand, within Dsui_0510 at 515.041 kb on - strand, within Dsui_0510 at 515.124 kb on + strand, within Dsui_0510 at 515.125 kb on - strand at 515.162 kb on + strand, within Dsui_0510 at 515.516 kb on + strand at 515.558 kb on + strand at 515.615 kb on - strand at 515.770 kb on + strand, within Dsui_0511 at 515.778 kb on - strand, within Dsui_0511 at 515.868 kb on - strand, within Dsui_0511 at 515.957 kb on + strand, within Dsui_0511 at 516.055 kb on - strand at 516.062 kb on + strand at 516.070 kb on - strand at 516.391 kb on - strand at 516.391 kb on - strand at 516.415 kb on + strand at 516.425 kb on - strand at 516.455 kb on + strand, within Dsui_0512 at 516.463 kb on - strand, within Dsui_0512 at 516.463 kb on - strand, within Dsui_0512 at 516.533 kb on + strand, within Dsui_0512 at 516.555 kb on + strand, within Dsui_0512
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 513,786 + Dsui_0509 0.10 -2.5 513,963 + Dsui_0509 0.28 -3.1 513,999 - Dsui_0509 0.32 +0.4 514,085 + Dsui_0509 0.41 +0.1 514,095 + Dsui_0509 0.42 -1.5 514,098 - Dsui_0509 0.42 -0.9 514,103 - -1.5 514,109 + Dsui_0509 0.43 -2.2 514,166 + Dsui_0509 0.49 -0.9 514,195 + Dsui_0509 0.52 +0.1 514,195 + Dsui_0509 0.52 -1.5 514,203 - Dsui_0509 0.53 -1.9 514,203 - Dsui_0509 0.53 +0.1 514,214 + Dsui_0509 0.54 -2.7 514,263 - Dsui_0509 0.59 -2.7 514,363 - -0.9 514,425 - Dsui_0509 0.76 -0.9 514,456 - Dsui_0509 0.79 +0.1 514,474 + +0.1 514,549 + Dsui_0509 0.88 -0.9 514,585 + +0.1 514,827 - +0.1 514,840 - +0.1 514,854 - Dsui_0510 0.21 -0.9 514,905 + Dsui_0510 0.26 -1.5 514,971 + Dsui_0510 0.34 -0.9 515,041 - Dsui_0510 0.41 -1.5 515,124 + Dsui_0510 0.50 -1.9 515,125 - +0.1 515,162 + Dsui_0510 0.54 -2.7 515,516 + +0.1 515,558 + -1.9 515,615 - +0.1 515,770 + Dsui_0511 0.37 -0.9 515,778 - Dsui_0511 0.39 -0.9 515,868 - Dsui_0511 0.58 +0.1 515,957 + Dsui_0511 0.77 -1.5 516,055 - +0.1 516,062 + -4.3 516,070 - -1.5 516,391 - -2.5 516,391 - +0.1 516,415 + +0.1 516,425 - -0.9 516,455 + Dsui_0512 0.14 -0.9 516,463 - Dsui_0512 0.16 -1.5 516,463 - Dsui_0512 0.16 +0.1 516,533 + Dsui_0512 0.31 +2.1 516,555 + Dsui_0512 0.35 -0.3
Or see this region's nucleotide sequence