Strain Fitness in Dechlorosoma suillum PS around Dsui_0508

Experiment: ALP with perchlorate 3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0506 and Dsui_0507 are separated by 301 nucleotidesDsui_0507 and Dsui_0508 are separated by 1 nucleotidesDsui_0508 and Dsui_0509 are separated by 89 nucleotides Dsui_0506: Dsui_0506 - diguanylate cyclase (GGDEF) domain-containing protein, at 508,316 to 510,517 _0506 Dsui_0507: Dsui_0507 - uncharacterized protein involved in formation of periplasmic nitrate reductase, at 510,819 to 511,067 _0507 Dsui_0508: Dsui_0508 - periplasmic nitrate reductase, large subunit, at 511,069 to 513,594 _0508 Dsui_0509: Dsui_0509 - MauM/NapG family ferredoxin-type protein, at 513,684 to 514,664 _0509 Position (kb) 511 512 513 514Strain fitness (log2 ratio) -3 -2 -1 0 1at 510.097 kb on - strand, within Dsui_0506at 510.134 kb on - strand, within Dsui_0506at 510.139 kb on + strand, within Dsui_0506at 510.147 kb on - strand, within Dsui_0506at 510.282 kb on + strand, within Dsui_0506at 510.287 kb on + strandat 510.290 kb on - strand, within Dsui_0506at 510.325 kb on - strandat 510.334 kb on + strandat 510.334 kb on + strandat 510.342 kb on - strandat 510.361 kb on + strandat 510.361 kb on + strandat 510.369 kb on - strandat 510.369 kb on - strandat 510.369 kb on - strandat 510.369 kb on - strandat 510.369 kb on - strandat 510.409 kb on + strandat 510.452 kb on + strandat 510.512 kb on + strandat 510.512 kb on + strandat 510.512 kb on + strandat 510.512 kb on + strandat 510.600 kb on - strandat 510.644 kb on + strandat 510.659 kb on + strandat 510.699 kb on - strandat 510.699 kb on - strandat 510.754 kb on + strandat 510.762 kb on - strandat 510.762 kb on - strandat 510.773 kb on - strandat 510.847 kb on - strand, within Dsui_0507at 510.879 kb on + strand, within Dsui_0507at 510.916 kb on + strand, within Dsui_0507at 510.979 kb on + strand, within Dsui_0507at 511.022 kb on - strand, within Dsui_0507at 511.072 kb on + strandat 511.314 kb on - strandat 511.317 kb on + strandat 511.366 kb on + strand, within Dsui_0508at 511.430 kb on + strand, within Dsui_0508at 511.464 kb on + strand, within Dsui_0508at 511.608 kb on + strand, within Dsui_0508at 511.623 kb on - strand, within Dsui_0508at 511.749 kb on - strand, within Dsui_0508at 511.775 kb on - strand, within Dsui_0508at 511.900 kb on + strand, within Dsui_0508at 511.900 kb on + strand, within Dsui_0508at 511.973 kb on + strand, within Dsui_0508at 512.005 kb on - strand, within Dsui_0508at 512.009 kb on - strand, within Dsui_0508at 512.054 kb on - strand, within Dsui_0508at 512.054 kb on - strand, within Dsui_0508at 512.054 kb on - strandat 512.091 kb on + strandat 512.091 kb on + strand, within Dsui_0508at 512.091 kb on + strand, within Dsui_0508at 512.099 kb on - strand, within Dsui_0508at 512.129 kb on - strand, within Dsui_0508at 512.155 kb on - strand, within Dsui_0508at 512.186 kb on - strandat 512.186 kb on - strand, within Dsui_0508at 512.198 kb on - strand, within Dsui_0508at 512.204 kb on - strand, within Dsui_0508at 512.225 kb on - strand, within Dsui_0508at 512.273 kb on - strand, within Dsui_0508at 512.305 kb on - strand, within Dsui_0508at 512.318 kb on + strand, within Dsui_0508at 512.482 kb on - strand, within Dsui_0508at 512.494 kb on + strand, within Dsui_0508at 512.527 kb on + strand, within Dsui_0508at 512.538 kb on + strand, within Dsui_0508at 512.569 kb on + strand, within Dsui_0508at 512.600 kb on + strand, within Dsui_0508at 512.631 kb on - strand, within Dsui_0508at 512.751 kb on + strand, within Dsui_0508at 512.764 kb on + strand, within Dsui_0508at 512.764 kb on + strand, within Dsui_0508at 512.772 kb on - strand, within Dsui_0508at 512.868 kb on + strand, within Dsui_0508at 512.900 kb on + strand, within Dsui_0508at 512.924 kb on + strand, within Dsui_0508at 512.934 kb on + strand, within Dsui_0508at 512.942 kb on - strandat 512.942 kb on - strand, within Dsui_0508at 512.942 kb on - strandat 512.973 kb on - strand, within Dsui_0508at 513.085 kb on + strand, within Dsui_0508at 513.132 kb on - strand, within Dsui_0508at 513.132 kb on - strand, within Dsui_0508at 513.138 kb on + strand, within Dsui_0508at 513.146 kb on - strand, within Dsui_0508at 513.157 kb on - strand, within Dsui_0508at 513.238 kb on + strand, within Dsui_0508at 513.252 kb on + strand, within Dsui_0508at 513.252 kb on + strand, within Dsui_0508at 513.260 kb on - strand, within Dsui_0508at 513.260 kb on - strand, within Dsui_0508at 513.318 kb on + strand, within Dsui_0508at 513.326 kb on - strand, within Dsui_0508at 513.326 kb on - strand, within Dsui_0508at 513.332 kb on - strandat 513.469 kb on + strandat 513.515 kb on + strandat 513.572 kb on + strandat 513.643 kb on + strandat 513.786 kb on + strand, within Dsui_0509at 513.963 kb on + strand, within Dsui_0509at 513.999 kb on - strand, within Dsui_0509at 514.085 kb on + strand, within Dsui_0509at 514.095 kb on + strand, within Dsui_0509at 514.098 kb on - strand, within Dsui_0509at 514.103 kb on - strandat 514.109 kb on + strand, within Dsui_0509at 514.166 kb on + strand, within Dsui_0509at 514.195 kb on + strand, within Dsui_0509at 514.195 kb on + strand, within Dsui_0509at 514.203 kb on - strand, within Dsui_0509at 514.203 kb on - strand, within Dsui_0509at 514.214 kb on + strand, within Dsui_0509at 514.263 kb on - strand, within Dsui_0509at 514.363 kb on - strandat 514.425 kb on - strand, within Dsui_0509at 514.456 kb on - strand, within Dsui_0509at 514.474 kb on + strandat 514.549 kb on + strand, within Dsui_0509at 514.585 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM
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510,097 - Dsui_0506 0.81 -0.6
510,134 - Dsui_0506 0.83 -1.3
510,139 + Dsui_0506 0.83 -2.5
510,147 - Dsui_0506 0.83 +0.9
510,282 + Dsui_0506 0.89 +0.1
510,287 + +0.1
510,290 - Dsui_0506 0.90 -1.2
510,325 - +0.7
510,334 + +0.1
510,334 + +0.1
510,342 - +1.6
510,361 + +0.1
510,361 + -2.7
510,369 - -0.6
510,369 - +0.2
510,369 - +0.1
510,369 - -2.2
510,369 - +0.1
510,409 + -0.9
510,452 + -3.2
510,512 + -3.2
510,512 + -0.9
510,512 + -1.9
510,512 + -0.9
510,600 - -0.0
510,644 + +0.1
510,659 + -0.9
510,699 - -1.5
510,699 - -1.6
510,754 + -1.9
510,762 - -1.5
510,762 - -1.5
510,773 - -0.9
510,847 - Dsui_0507 0.11 -1.5
510,879 + Dsui_0507 0.24 -1.5
510,916 + Dsui_0507 0.39 -0.9
510,979 + Dsui_0507 0.64 +0.1
511,022 - Dsui_0507 0.82 +0.1
511,072 + -1.9
511,314 - -1.9
511,317 + -0.9
511,366 + Dsui_0508 0.12 -3.3
511,430 + Dsui_0508 0.14 -2.7
511,464 + Dsui_0508 0.16 -2.9
511,608 + Dsui_0508 0.21 +0.1
511,623 - Dsui_0508 0.22 -0.9
511,749 - Dsui_0508 0.27 +0.1
511,775 - Dsui_0508 0.28 -1.5
511,900 + Dsui_0508 0.33 -0.9
511,900 + Dsui_0508 0.33 -0.9
511,973 + Dsui_0508 0.36 -1.5
512,005 - Dsui_0508 0.37 -0.9
512,009 - Dsui_0508 0.37 -0.9
512,054 - Dsui_0508 0.39 -0.9
512,054 - Dsui_0508 0.39 -1.5
512,054 - +0.1
512,091 + +0.1
512,091 + Dsui_0508 0.40 +0.1
512,091 + Dsui_0508 0.40 -2.5
512,099 - Dsui_0508 0.41 +0.1
512,129 - Dsui_0508 0.42 +0.1
512,155 - Dsui_0508 0.43 -1.9
512,186 - +0.1
512,186 - Dsui_0508 0.44 -2.7
512,198 - Dsui_0508 0.45 -2.5
512,204 - Dsui_0508 0.45 -0.9
512,225 - Dsui_0508 0.46 -1.5
512,273 - Dsui_0508 0.48 +0.1
512,305 - Dsui_0508 0.49 -1.5
512,318 + Dsui_0508 0.49 +1.7
512,482 - Dsui_0508 0.56 +0.1
512,494 + Dsui_0508 0.56 -3.2
512,527 + Dsui_0508 0.58 -2.5
512,538 + Dsui_0508 0.58 -1.5
512,569 + Dsui_0508 0.59 -2.5
512,600 + Dsui_0508 0.61 -1.5
512,631 - Dsui_0508 0.62 +0.1
512,751 + Dsui_0508 0.67 +0.1
512,764 + Dsui_0508 0.67 +0.1
512,764 + Dsui_0508 0.67 -1.9
512,772 - Dsui_0508 0.67 -2.5
512,868 + Dsui_0508 0.71 -1.5
512,900 + Dsui_0508 0.72 -1.5
512,924 + Dsui_0508 0.73 -3.1
512,934 + Dsui_0508 0.74 +0.1
512,942 - +0.1
512,942 - Dsui_0508 0.74 -1.9
512,942 - +0.1
512,973 - Dsui_0508 0.75 +0.1
513,085 + Dsui_0508 0.80 -1.5
513,132 - Dsui_0508 0.82 -0.9
513,132 - Dsui_0508 0.82 -0.9
513,138 + Dsui_0508 0.82 -2.7
513,146 - Dsui_0508 0.82 +0.1
513,157 - Dsui_0508 0.83 -0.9
513,238 + Dsui_0508 0.86 -0.9
513,252 + Dsui_0508 0.86 -2.1
513,252 + Dsui_0508 0.86 +0.1
513,260 - Dsui_0508 0.87 +0.1
513,260 - Dsui_0508 0.87 -0.9
513,318 + Dsui_0508 0.89 -1.9
513,326 - Dsui_0508 0.89 +0.1
513,326 - Dsui_0508 0.89 -2.5
513,332 - +0.1
513,469 + -2.7
513,515 + -2.2
513,572 + -2.2
513,643 + -1.5
513,786 + Dsui_0509 0.10 -2.5
513,963 + Dsui_0509 0.28 -3.1
513,999 - Dsui_0509 0.32 +0.4
514,085 + Dsui_0509 0.41 +0.1
514,095 + Dsui_0509 0.42 -1.5
514,098 - Dsui_0509 0.42 -0.9
514,103 - -1.5
514,109 + Dsui_0509 0.43 -2.2
514,166 + Dsui_0509 0.49 -0.9
514,195 + Dsui_0509 0.52 +0.1
514,195 + Dsui_0509 0.52 -1.5
514,203 - Dsui_0509 0.53 -1.9
514,203 - Dsui_0509 0.53 +0.1
514,214 + Dsui_0509 0.54 -2.7
514,263 - Dsui_0509 0.59 -2.7
514,363 - -0.9
514,425 - Dsui_0509 0.76 -0.9
514,456 - Dsui_0509 0.79 +0.1
514,474 + +0.1
514,549 + Dsui_0509 0.88 -0.9
514,585 + +0.1

Or see this region's nucleotide sequence