Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0486 and Dsui_0487 are separated by 156 nucleotides Dsui_0487 and Dsui_0488 overlap by 4 nucleotides Dsui_0488 and Dsui_0489 are separated by 72 nucleotides Dsui_0489 and Dsui_0490 are separated by 68 nucleotides
Dsui_0486: Dsui_0486 - crossover junction endodeoxyribonuclease RuvC, at 489,325 to 489,930
_0486
Dsui_0487: Dsui_0487 - hemerythrin HHE cation binding domain-containing protein, at 490,087 to 490,620
_0487
Dsui_0488: Dsui_0488 - EamA-like transporter family, at 490,617 to 491,474
_0488
Dsui_0489: Dsui_0489 - DNA-binding regulatory protein, YebC/PmpR family, at 491,547 to 492,272
_0489
Dsui_0490: Dsui_0490 - putative ATPase, at 492,341 to 493,861
_0490
Position (kb) 490
491
492 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 489.946 kb on - strand at 490.008 kb on - strand at 490.055 kb on + strand at 490.059 kb on + strand at 490.060 kb on + strand at 490.068 kb on - strand at 490.140 kb on + strand at 490.141 kb on - strand, within Dsui_0487 at 490.214 kb on - strand, within Dsui_0487 at 490.306 kb on - strand, within Dsui_0487 at 490.374 kb on + strand, within Dsui_0487 at 490.611 kb on - strand at 490.715 kb on + strand, within Dsui_0488 at 490.723 kb on - strand, within Dsui_0488 at 490.728 kb on - strand, within Dsui_0488 at 490.738 kb on - strand, within Dsui_0488 at 490.791 kb on - strand, within Dsui_0488 at 490.849 kb on + strand, within Dsui_0488 at 490.899 kb on + strand at 490.991 kb on - strand, within Dsui_0488 at 491.078 kb on + strand, within Dsui_0488 at 491.081 kb on - strand, within Dsui_0488 at 491.182 kb on + strand, within Dsui_0488 at 491.259 kb on + strand, within Dsui_0488 at 491.300 kb on - strand, within Dsui_0488 at 491.355 kb on - strand, within Dsui_0488 at 491.357 kb on + strand, within Dsui_0488 at 491.395 kb on + strand at 491.436 kb on + strand at 491.442 kb on - strand at 491.568 kb on + strand at 491.576 kb on - strand at 491.576 kb on - strand at 491.576 kb on - strand at 491.577 kb on - strand at 491.613 kb on - strand at 491.615 kb on + strand at 491.717 kb on - strand, within Dsui_0489 at 492.008 kb on - strand, within Dsui_0489 at 492.108 kb on - strand, within Dsui_0489 at 492.196 kb on + strand at 492.199 kb on - strand, within Dsui_0489 at 492.204 kb on - strand at 492.212 kb on + strand at 492.237 kb on - strand at 492.252 kb on - strand at 492.261 kb on - strand at 492.261 kb on - strand at 492.261 kb on - strand at 492.273 kb on + strand at 492.273 kb on + strand at 492.397 kb on - strand at 492.416 kb on + strand at 492.443 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 489,946 - +0.1 490,008 - -1.5 490,055 + -1.9 490,059 + -2.5 490,060 + -3.2 490,068 - +0.1 490,140 + -1.9 490,141 - Dsui_0487 0.10 +1.1 490,214 - Dsui_0487 0.24 -2.5 490,306 - Dsui_0487 0.41 -2.2 490,374 + Dsui_0487 0.54 -1.9 490,611 - -0.6 490,715 + Dsui_0488 0.11 -2.5 490,723 - Dsui_0488 0.12 -0.2 490,728 - Dsui_0488 0.13 +0.3 490,738 - Dsui_0488 0.14 -0.8 490,791 - Dsui_0488 0.20 +0.4 490,849 + Dsui_0488 0.27 -1.5 490,899 + +0.1 490,991 - Dsui_0488 0.44 +0.0 491,078 + Dsui_0488 0.54 -2.5 491,081 - Dsui_0488 0.54 -0.6 491,182 + Dsui_0488 0.66 +0.1 491,259 + Dsui_0488 0.75 +0.1 491,300 - Dsui_0488 0.80 -0.2 491,355 - Dsui_0488 0.86 -0.5 491,357 + Dsui_0488 0.86 -3.1 491,395 + -3.5 491,436 + +0.1 491,442 - -0.7 491,568 + +0.1 491,576 - -0.0 491,576 - -0.4 491,576 - -1.5 491,577 - -0.2 491,613 - -0.1 491,615 + -1.5 491,717 - Dsui_0489 0.23 -0.6 492,008 - Dsui_0489 0.63 +0.0 492,108 - Dsui_0489 0.77 -0.4 492,196 + +0.1 492,199 - Dsui_0489 0.90 -0.4 492,204 - -1.0 492,212 + +0.1 492,237 - +0.2 492,252 - -0.7 492,261 - -0.3 492,261 - -0.3 492,261 - -0.6 492,273 + -1.5 492,273 + -2.5 492,397 - +0.1 492,416 + -0.1 492,443 + -0.2
Or see this region's nucleotide sequence