Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0432 and Dsui_0433 are separated by 93 nucleotides Dsui_0433 and Dsui_0434 are separated by 51 nucleotides
Dsui_0432: Dsui_0432 - hypothetical protein, at 438,123 to 439,199
_0432
Dsui_0433: Dsui_0433 - collagenase-like protease, at 439,293 to 440,606
_0433
Dsui_0434: Dsui_0434 - ribonuclease, Rne/Rng family, at 440,658 to 442,139
_0434
Position (kb) 439
440
441 Strain fitness (log2 ratio) -2
-1
0
1 at 438.331 kb on + strand, within Dsui_0432 at 438.390 kb on + strand at 438.506 kb on - strand, within Dsui_0432 at 439.022 kb on + strand, within Dsui_0432 at 439.157 kb on + strand at 439.203 kb on - strand at 439.233 kb on + strand at 439.242 kb on + strand at 439.299 kb on - strand at 439.540 kb on - strand, within Dsui_0433 at 439.784 kb on - strand, within Dsui_0433 at 439.814 kb on + strand, within Dsui_0433 at 439.950 kb on - strand at 439.996 kb on - strand, within Dsui_0433 at 440.076 kb on - strand, within Dsui_0433 at 440.134 kb on - strand, within Dsui_0433 at 440.266 kb on - strand, within Dsui_0433 at 440.291 kb on - strand, within Dsui_0433 at 440.384 kb on + strand, within Dsui_0433 at 440.392 kb on - strand, within Dsui_0433 at 440.447 kb on + strand, within Dsui_0433 at 440.455 kb on - strand, within Dsui_0433 at 440.619 kb on + strand at 440.838 kb on + strand, within Dsui_0434 at 440.839 kb on + strand, within Dsui_0434 at 440.881 kb on - strand, within Dsui_0434 at 440.961 kb on + strand, within Dsui_0434 at 441.140 kb on - strand, within Dsui_0434 at 441.408 kb on + strand, within Dsui_0434 at 441.416 kb on - strand at 441.454 kb on - strand at 441.504 kb on + strand, within Dsui_0434
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 438,331 + Dsui_0432 0.19 +0.1 438,390 + +0.1 438,506 - Dsui_0432 0.36 +0.8 439,022 + Dsui_0432 0.83 -2.7 439,157 + -0.9 439,203 - -0.6 439,233 + +0.1 439,242 + +0.1 439,299 - -0.3 439,540 - Dsui_0433 0.19 -0.8 439,784 - Dsui_0433 0.37 -0.3 439,814 + Dsui_0433 0.40 +0.1 439,950 - +1.1 439,996 - Dsui_0433 0.54 -0.7 440,076 - Dsui_0433 0.60 -0.1 440,134 - Dsui_0433 0.64 -1.6 440,266 - Dsui_0433 0.74 -0.6 440,291 - Dsui_0433 0.76 +0.9 440,384 + Dsui_0433 0.83 -0.3 440,392 - Dsui_0433 0.84 -0.6 440,447 + Dsui_0433 0.88 -2.5 440,455 - Dsui_0433 0.88 -2.1 440,619 + -0.4 440,838 + Dsui_0434 0.12 +0.1 440,839 + Dsui_0434 0.12 -0.1 440,881 - Dsui_0434 0.15 +0.1 440,961 + Dsui_0434 0.20 +0.3 441,140 - Dsui_0434 0.33 -1.9 441,408 + Dsui_0434 0.51 -0.9 441,416 - +0.1 441,454 - -0.9 441,504 + Dsui_0434 0.57 -0.2
Or see this region's nucleotide sequence