Strain Fitness in Dechlorosoma suillum PS around Dsui_0253

Experiment: ALP with perchlorate 3 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0251 and Dsui_0252 are separated by 20 nucleotidesDsui_0252 and Dsui_0253 overlap by 20 nucleotidesDsui_0253 and Dsui_0254 are separated by 181 nucleotides Dsui_0251: Dsui_0251 - putative S-adenosylmethionine-dependent methyltransferase, YraL family, at 250,006 to 250,848 _0251 Dsui_0252: Dsui_0252 - TIGR00252 family protein, at 250,869 to 251,273 _0252 Dsui_0253: Dsui_0253 - HIRAN domain-containing protein, at 251,254 to 251,631 _0253 Dsui_0254: Dsui_0254 - tyrosyl-tRNA synthetase, at 251,813 to 253,087 _0254 Position (kb) 251 252Strain fitness (log2 ratio) -3 -2 -1 0 1at 250.267 kb on - strand, within Dsui_0251at 250.356 kb on - strand, within Dsui_0251at 250.376 kb on + strandat 250.384 kb on - strand, within Dsui_0251at 250.450 kb on - strand, within Dsui_0251at 250.533 kb on - strand, within Dsui_0251at 250.754 kb on - strand, within Dsui_0251at 250.812 kb on - strandat 250.923 kb on - strand, within Dsui_0252at 250.932 kb on + strand, within Dsui_0252at 250.992 kb on - strand, within Dsui_0252at 251.012 kb on + strandat 251.235 kb on + strandat 251.235 kb on + strandat 251.345 kb on + strand, within Dsui_0253at 251.420 kb on + strand, within Dsui_0253at 251.475 kb on + strand, within Dsui_0253at 251.530 kb on + strand, within Dsui_0253at 251.548 kb on - strand, within Dsui_0253at 251.613 kb on + strandat 251.632 kb on - strandat 251.765 kb on - strandat 251.775 kb on + strandat 251.775 kb on + strandat 251.783 kb on - strandat 251.783 kb on - strandat 251.789 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM
remove
250,267 - Dsui_0251 0.31 -0.4
250,356 - Dsui_0251 0.42 +1.2
250,376 + +0.2
250,384 - Dsui_0251 0.45 -1.4
250,450 - Dsui_0251 0.53 -1.4
250,533 - Dsui_0251 0.63 -1.8
250,754 - Dsui_0251 0.89 -1.4
250,812 - +0.2
250,923 - Dsui_0252 0.13 +0.2
250,932 + Dsui_0252 0.16 -0.8
250,992 - Dsui_0252 0.30 -0.8
251,012 + +0.2
251,235 + -1.8
251,235 + -2.1
251,345 + Dsui_0253 0.24 -1.8
251,420 + Dsui_0253 0.44 -1.8
251,475 + Dsui_0253 0.58 +0.2
251,530 + Dsui_0253 0.73 -0.8
251,548 - Dsui_0253 0.78 -2.8
251,613 + -0.2
251,632 - -0.8
251,765 - -0.8
251,775 + +0.2
251,775 + +0.8
251,783 - +0.1
251,783 - +0.0
251,789 - -0.0

Or see this region's nucleotide sequence