Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0201 and Dsui_0202 are separated by 3 nucleotides Dsui_0202 and Dsui_0203 are separated by 14 nucleotides Dsui_0203 and Dsui_0204 are separated by 1 nucleotides Dsui_0204 and Dsui_0205 overlap by 4 nucleotides Dsui_0205 and Dsui_0206 overlap by 4 nucleotides
Dsui_0201: Dsui_0201 - hypothetical protein, at 200,992 to 201,759
_0201
Dsui_0202: Dsui_0202 - hypothetical protein, at 201,763 to 202,095
_0202
Dsui_0203: Dsui_0203 - hypothetical protein, at 202,110 to 202,382
_0203
Dsui_0204: Dsui_0204 - hypothetical protein, at 202,384 to 204,846
_0204
Dsui_0205: Dsui_0205 - Conserved hypothetical protein 2217 (DUF2460), at 204,843 to 205,451
_0205
Dsui_0206: Dsui_0206 - phage conserved hypothetical protein, at 205,448 to 206,554
_0206
Position (kb) 202
203
204
205 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 201.427 kb on + strand, within Dsui_0201 at 201.510 kb on - strand, within Dsui_0201 at 201.757 kb on - strand at 201.850 kb on - strand, within Dsui_0202 at 201.881 kb on - strand, within Dsui_0202 at 201.881 kb on - strand at 202.083 kb on - strand at 202.122 kb on - strand at 202.137 kb on + strand at 202.156 kb on - strand, within Dsui_0203 at 202.183 kb on - strand, within Dsui_0203 at 202.380 kb on - strand at 202.412 kb on + strand at 202.413 kb on + strand at 202.559 kb on + strand at 202.567 kb on - strand at 202.567 kb on - strand at 202.569 kb on + strand at 202.654 kb on + strand, within Dsui_0204 at 202.659 kb on + strand, within Dsui_0204 at 202.962 kb on + strand, within Dsui_0204 at 202.963 kb on - strand, within Dsui_0204 at 202.963 kb on - strand, within Dsui_0204 at 203.124 kb on + strand at 203.273 kb on + strand, within Dsui_0204 at 203.322 kb on + strand, within Dsui_0204 at 203.342 kb on + strand, within Dsui_0204 at 203.359 kb on + strand, within Dsui_0204 at 203.411 kb on - strand, within Dsui_0204 at 203.444 kb on - strand, within Dsui_0204 at 203.498 kb on + strand, within Dsui_0204 at 203.567 kb on - strand, within Dsui_0204 at 203.590 kb on - strand, within Dsui_0204 at 203.764 kb on + strand, within Dsui_0204 at 203.899 kb on + strand at 203.924 kb on + strand, within Dsui_0204 at 204.021 kb on - strand, within Dsui_0204 at 204.231 kb on + strand, within Dsui_0204 at 204.231 kb on + strand, within Dsui_0204 at 204.284 kb on - strand, within Dsui_0204 at 204.339 kb on - strand, within Dsui_0204 at 204.380 kb on + strand, within Dsui_0204 at 204.516 kb on + strand, within Dsui_0204 at 204.555 kb on + strand, within Dsui_0204 at 204.555 kb on + strand, within Dsui_0204 at 204.563 kb on - strand, within Dsui_0204 at 204.756 kb on - strand at 204.827 kb on + strand at 204.853 kb on + strand at 204.877 kb on - strand at 204.992 kb on + strand, within Dsui_0205 at 205.013 kb on - strand, within Dsui_0205 at 205.037 kb on + strand, within Dsui_0205 at 205.103 kb on + strand, within Dsui_0205 at 205.112 kb on - strand, within Dsui_0205 at 205.112 kb on - strand, within Dsui_0205 at 205.144 kb on + strand, within Dsui_0205 at 205.252 kb on + strand, within Dsui_0205 at 205.259 kb on + strand at 205.406 kb on - strand at 205.538 kb on - strand at 205.546 kb on + strand at 205.554 kb on + strand at 205.644 kb on + strand, within Dsui_0206 at 205.794 kb on - strand, within Dsui_0206
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 201,427 + Dsui_0201 0.57 -0.8 201,510 - Dsui_0201 0.67 +0.2 201,757 - +0.2 201,850 - Dsui_0202 0.26 +0.2 201,881 - Dsui_0202 0.35 +0.2 201,881 - +0.2 202,083 - +0.2 202,122 - +0.2 202,137 + +0.2 202,156 - Dsui_0203 0.17 -1.4 202,183 - Dsui_0203 0.27 -2.1 202,380 - -1.4 202,412 + -0.8 202,413 + -0.8 202,559 + -0.8 202,567 - -1.4 202,567 - -1.4 202,569 + -0.8 202,654 + Dsui_0204 0.11 +0.2 202,659 + Dsui_0204 0.11 -0.8 202,962 + Dsui_0204 0.23 -1.4 202,963 - Dsui_0204 0.24 -2.6 202,963 - Dsui_0204 0.24 -0.8 203,124 + +0.2 203,273 + Dsui_0204 0.36 -0.8 203,322 + Dsui_0204 0.38 +0.2 203,342 + Dsui_0204 0.39 -0.8 203,359 + Dsui_0204 0.40 -3.0 203,411 - Dsui_0204 0.42 -0.8 203,444 - Dsui_0204 0.43 -2.1 203,498 + Dsui_0204 0.45 +0.2 203,567 - Dsui_0204 0.48 +0.2 203,590 - Dsui_0204 0.49 +0.2 203,764 + Dsui_0204 0.56 +0.2 203,899 + +0.2 203,924 + Dsui_0204 0.63 -2.4 204,021 - Dsui_0204 0.66 -2.4 204,231 + Dsui_0204 0.75 -2.6 204,231 + Dsui_0204 0.75 -0.8 204,284 - Dsui_0204 0.77 -2.8 204,339 - Dsui_0204 0.79 +0.2 204,380 + Dsui_0204 0.81 -1.4 204,516 + Dsui_0204 0.87 -2.1 204,555 + Dsui_0204 0.88 +0.2 204,555 + Dsui_0204 0.88 -0.8 204,563 - Dsui_0204 0.88 +0.2 204,756 - -2.4 204,827 + +0.2 204,853 + +0.2 204,877 - -0.8 204,992 + Dsui_0205 0.24 -0.8 205,013 - Dsui_0205 0.28 +0.2 205,037 + Dsui_0205 0.32 +0.2 205,103 + Dsui_0205 0.43 +0.2 205,112 - Dsui_0205 0.44 -2.1 205,112 - Dsui_0205 0.44 +0.2 205,144 + Dsui_0205 0.49 +0.2 205,252 + Dsui_0205 0.67 -0.8 205,259 + +0.2 205,406 - -3.1 205,538 - +0.2 205,546 + +0.2 205,554 + -0.8 205,644 + Dsui_0206 0.18 +0.2 205,794 - Dsui_0206 0.31 -1.8
Or see this region's nucleotide sequence