Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0198 and Dsui_0199 overlap by 4 nucleotides Dsui_0199 and Dsui_0200 overlap by 4 nucleotides Dsui_0200 and Dsui_0201 are separated by 55 nucleotides Dsui_0201 and Dsui_0202 are separated by 3 nucleotides
Dsui_0198: Dsui_0198 - phage conserved hypothetical protein, phiE125 gp8 family, at 199,487 to 200,035
_0198
Dsui_0199: Dsui_0199 - Bacteriophage protein of unknown function (DUF646), at 200,032 to 200,517
_0199
Dsui_0200: Dsui_0200 - hypothetical protein, at 200,514 to 200,936
_0200
Dsui_0201: Dsui_0201 - hypothetical protein, at 200,992 to 201,759
_0201
Dsui_0202: Dsui_0202 - hypothetical protein, at 201,763 to 202,095
_0202
Position (kb)
200
201 Strain fitness (log2 ratio)
-2
-1
0
1 at 199.537 kb on - strand at 199.556 kb on + strand, within Dsui_0198 at 199.645 kb on + strand, within Dsui_0198 at 199.691 kb on - strand, within Dsui_0198 at 199.884 kb on - strand, within Dsui_0198 at 199.884 kb on - strand, within Dsui_0198 at 199.933 kb on - strand, within Dsui_0198 at 200.070 kb on - strand at 200.121 kb on - strand, within Dsui_0199 at 200.343 kb on + strand, within Dsui_0199 at 200.454 kb on - strand, within Dsui_0199 at 200.454 kb on - strand, within Dsui_0199 at 200.528 kb on + strand at 200.541 kb on + strand at 200.543 kb on + strand at 200.551 kb on + strand at 200.559 kb on - strand, within Dsui_0200 at 200.602 kb on + strand, within Dsui_0200 at 200.613 kb on + strand, within Dsui_0200 at 200.696 kb on + strand, within Dsui_0200 at 200.905 kb on - strand at 200.949 kb on - strand at 200.952 kb on + strand at 200.952 kb on + strand at 200.960 kb on - strand at 200.970 kb on + strand at 200.978 kb on - strand at 200.998 kb on - strand at 201.056 kb on - strand at 201.185 kb on - strand, within Dsui_0201 at 201.195 kb on + strand, within Dsui_0201 at 201.231 kb on - strand, within Dsui_0201 at 201.299 kb on + strand, within Dsui_0201 at 201.322 kb on - strand, within Dsui_0201 at 201.367 kb on - strand, within Dsui_0201 at 201.427 kb on + strand, within Dsui_0201 at 201.510 kb on - strand, within Dsui_0201 at 201.757 kb on - strand at 201.850 kb on - strand, within Dsui_0202 at 201.881 kb on - strand, within Dsui_0202 at 201.881 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 199,537 - +0.2 199,556 + Dsui_0198 0.13 +0.2 199,645 + Dsui_0198 0.29 +0.2 199,691 - Dsui_0198 0.37 -0.8 199,884 - Dsui_0198 0.72 +0.2 199,884 - Dsui_0198 0.72 -0.3 199,933 - Dsui_0198 0.81 -0.8 200,070 - +0.2 200,121 - Dsui_0199 0.18 -0.8 200,343 + Dsui_0199 0.64 +0.2 200,454 - Dsui_0199 0.87 -0.8 200,454 - Dsui_0199 0.87 +0.2 200,528 + +0.2 200,541 + +0.2 200,543 + +0.2 200,551 + +0.2 200,559 - Dsui_0200 0.11 +0.2 200,602 + Dsui_0200 0.21 -0.8 200,613 + Dsui_0200 0.23 -1.8 200,696 + Dsui_0200 0.43 -2.4 200,905 - -0.8 200,949 - -1.4 200,952 + +0.2 200,952 + -1.4 200,960 - -1.4 200,970 + -1.4 200,978 - +0.2 200,998 - +0.2 201,056 - +0.2 201,185 - Dsui_0201 0.25 +0.2 201,195 + Dsui_0201 0.26 -0.8 201,231 - Dsui_0201 0.31 -1.4 201,299 + Dsui_0201 0.40 +0.2 201,322 - Dsui_0201 0.43 +0.2 201,367 - Dsui_0201 0.49 -0.8 201,427 + Dsui_0201 0.57 -0.8 201,510 - Dsui_0201 0.67 +0.2 201,757 - +0.2 201,850 - Dsui_0202 0.26 +0.2 201,881 - Dsui_0202 0.35 +0.2 201,881 - +0.2
Or see this region's nucleotide sequence