Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0187 and Dsui_0188 are separated by 28 nucleotides Dsui_0188 and Dsui_0189 are separated by 181 nucleotides Dsui_0189 and Dsui_0190 overlap by 4 nucleotides Dsui_0190 and Dsui_0191 overlap by 23 nucleotides Dsui_0191 and Dsui_0192 are separated by 183 nucleotides
Dsui_0187: Dsui_0187 - hypothetical protein, at 188,415 to 189,269
_0187
Dsui_0188: Dsui_0188 - hypothetical protein, at 189,298 to 189,816
_0188
Dsui_0189: Dsui_0189 - holliday junction resolvase, at 189,998 to 190,438
_0189
Dsui_0190: Dsui_0190 - hypothetical protein, at 190,435 to 190,635
_0190
Dsui_0191: Dsui_0191 - hypothetical protein, at 190,613 to 191,242
_0191
Dsui_0192: Dsui_0192 - hypothetical protein, at 191,426 to 191,869
_0192
Position (kb) 189
190
191 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 189.032 kb on - strand, within Dsui_0187 at 189.071 kb on + strand, within Dsui_0187 at 189.114 kb on + strand, within Dsui_0187 at 189.138 kb on - strand, within Dsui_0187 at 189.316 kb on + strand at 189.539 kb on + strand at 189.573 kb on + strand, within Dsui_0188 at 189.596 kb on + strand, within Dsui_0188 at 189.741 kb on - strand, within Dsui_0188 at 189.745 kb on - strand, within Dsui_0188 at 189.823 kb on + strand at 189.823 kb on + strand at 189.902 kb on - strand at 189.966 kb on + strand at 189.977 kb on + strand at 190.057 kb on - strand, within Dsui_0189 at 190.101 kb on - strand, within Dsui_0189 at 190.153 kb on + strand, within Dsui_0189 at 190.153 kb on + strand, within Dsui_0189 at 190.153 kb on + strand, within Dsui_0189 at 190.161 kb on - strand, within Dsui_0189 at 190.161 kb on - strand, within Dsui_0189 at 190.198 kb on + strand, within Dsui_0189 at 190.198 kb on + strand, within Dsui_0189 at 190.212 kb on - strand, within Dsui_0189 at 190.279 kb on + strand, within Dsui_0189 at 190.367 kb on - strand, within Dsui_0189 at 190.432 kb on + strand at 190.546 kb on + strand, within Dsui_0190 at 190.651 kb on + strand at 190.668 kb on + strand at 190.697 kb on + strand, within Dsui_0191 at 190.705 kb on - strand, within Dsui_0191 at 190.792 kb on - strand, within Dsui_0191 at 190.797 kb on - strand, within Dsui_0191 at 190.806 kb on - strand, within Dsui_0191 at 190.882 kb on - strand at 191.026 kb on - strand, within Dsui_0191 at 191.136 kb on - strand, within Dsui_0191 at 191.285 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 189,032 - Dsui_0187 0.72 +0.2 189,071 + Dsui_0187 0.77 +0.2 189,114 + Dsui_0187 0.82 -1.8 189,138 - Dsui_0187 0.85 -1.4 189,316 + +0.2 189,539 + +0.2 189,573 + Dsui_0188 0.53 -2.8 189,596 + Dsui_0188 0.57 +0.2 189,741 - Dsui_0188 0.85 -0.8 189,745 - Dsui_0188 0.86 +0.2 189,823 + +0.2 189,823 + +0.2 189,902 - -2.4 189,966 + +0.2 189,977 + +0.2 190,057 - Dsui_0189 0.13 -0.8 190,101 - Dsui_0189 0.23 +0.2 190,153 + Dsui_0189 0.35 +0.2 190,153 + Dsui_0189 0.35 +0.2 190,153 + Dsui_0189 0.35 -1.8 190,161 - Dsui_0189 0.37 -1.8 190,161 - Dsui_0189 0.37 -2.1 190,198 + Dsui_0189 0.45 +0.2 190,198 + Dsui_0189 0.45 +0.2 190,212 - Dsui_0189 0.49 -0.8 190,279 + Dsui_0189 0.64 -0.8 190,367 - Dsui_0189 0.84 +0.2 190,432 + -0.8 190,546 + Dsui_0190 0.55 -0.8 190,651 + +0.2 190,668 + -1.4 190,697 + Dsui_0191 0.13 +0.2 190,705 - Dsui_0191 0.15 +0.2 190,792 - Dsui_0191 0.28 -2.8 190,797 - Dsui_0191 0.29 -0.8 190,806 - Dsui_0191 0.31 -2.1 190,882 - +0.2 191,026 - Dsui_0191 0.66 +0.2 191,136 - Dsui_0191 0.83 +0.2 191,285 - -1.4
Or see this region's nucleotide sequence