Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0186 and Dsui_0187 are separated by 16 nucleotides Dsui_0187 and Dsui_0188 are separated by 28 nucleotides Dsui_0188 and Dsui_0189 are separated by 181 nucleotides
Dsui_0186: Dsui_0186 - DNA/RNA helicase, superfamily II, SNF2 family, at 185,870 to 188,398
_0186
Dsui_0187: Dsui_0187 - hypothetical protein, at 188,415 to 189,269
_0187
Dsui_0188: Dsui_0188 - hypothetical protein, at 189,298 to 189,816
_0188
Dsui_0189: Dsui_0189 - holliday junction resolvase, at 189,998 to 190,438
_0189
Position (kb) 188
189
190 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 187.462 kb on + strand, within Dsui_0186 at 187.506 kb on - strand, within Dsui_0186 at 187.507 kb on + strand, within Dsui_0186 at 187.610 kb on + strand, within Dsui_0186 at 187.710 kb on + strand, within Dsui_0186 at 187.710 kb on + strand, within Dsui_0186 at 187.752 kb on - strand, within Dsui_0186 at 187.757 kb on + strand, within Dsui_0186 at 187.760 kb on - strand, within Dsui_0186 at 187.780 kb on + strand, within Dsui_0186 at 187.788 kb on - strand, within Dsui_0186 at 188.024 kb on - strand, within Dsui_0186 at 188.047 kb on - strand, within Dsui_0186 at 188.149 kb on - strand at 188.294 kb on + strand at 188.391 kb on - strand at 188.410 kb on - strand at 188.421 kb on - strand at 188.463 kb on + strand at 188.463 kb on + strand at 188.481 kb on - strand at 188.673 kb on + strand, within Dsui_0187 at 188.707 kb on - strand, within Dsui_0187 at 188.731 kb on - strand, within Dsui_0187 at 188.859 kb on - strand, within Dsui_0187 at 188.936 kb on - strand, within Dsui_0187 at 188.978 kb on - strand, within Dsui_0187 at 188.986 kb on + strand, within Dsui_0187 at 189.032 kb on - strand, within Dsui_0187 at 189.071 kb on + strand, within Dsui_0187 at 189.114 kb on + strand, within Dsui_0187 at 189.138 kb on - strand, within Dsui_0187 at 189.316 kb on + strand at 189.539 kb on + strand at 189.573 kb on + strand, within Dsui_0188 at 189.596 kb on + strand, within Dsui_0188 at 189.741 kb on - strand, within Dsui_0188 at 189.745 kb on - strand, within Dsui_0188 at 189.823 kb on + strand at 189.823 kb on + strand at 189.902 kb on - strand at 189.966 kb on + strand at 189.977 kb on + strand at 190.057 kb on - strand, within Dsui_0189 at 190.101 kb on - strand, within Dsui_0189 at 190.153 kb on + strand, within Dsui_0189 at 190.153 kb on + strand, within Dsui_0189 at 190.153 kb on + strand, within Dsui_0189 at 190.161 kb on - strand, within Dsui_0189 at 190.161 kb on - strand, within Dsui_0189 at 190.198 kb on + strand, within Dsui_0189 at 190.198 kb on + strand, within Dsui_0189 at 190.212 kb on - strand, within Dsui_0189
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 187,462 + Dsui_0186 0.63 -0.8 187,506 - Dsui_0186 0.65 +0.2 187,507 + Dsui_0186 0.65 -0.8 187,610 + Dsui_0186 0.69 +0.2 187,710 + Dsui_0186 0.73 -0.8 187,710 + Dsui_0186 0.73 +0.2 187,752 - Dsui_0186 0.74 -1.4 187,757 + Dsui_0186 0.75 +0.2 187,760 - Dsui_0186 0.75 -1.4 187,780 + Dsui_0186 0.76 -0.8 187,788 - Dsui_0186 0.76 +0.2 188,024 - Dsui_0186 0.85 +0.2 188,047 - Dsui_0186 0.86 -0.8 188,149 - -0.8 188,294 + +0.2 188,391 - -0.8 188,410 - -0.8 188,421 - -0.8 188,463 + +0.2 188,463 + +0.2 188,481 - +0.2 188,673 + Dsui_0187 0.30 -2.1 188,707 - Dsui_0187 0.34 +0.2 188,731 - Dsui_0187 0.37 +0.2 188,859 - Dsui_0187 0.52 -0.8 188,936 - Dsui_0187 0.61 -0.8 188,978 - Dsui_0187 0.66 -1.4 188,986 + Dsui_0187 0.67 -1.4 189,032 - Dsui_0187 0.72 +0.2 189,071 + Dsui_0187 0.77 +0.2 189,114 + Dsui_0187 0.82 -1.8 189,138 - Dsui_0187 0.85 -1.4 189,316 + +0.2 189,539 + +0.2 189,573 + Dsui_0188 0.53 -2.8 189,596 + Dsui_0188 0.57 +0.2 189,741 - Dsui_0188 0.85 -0.8 189,745 - Dsui_0188 0.86 +0.2 189,823 + +0.2 189,823 + +0.2 189,902 - -2.4 189,966 + +0.2 189,977 + +0.2 190,057 - Dsui_0189 0.13 -0.8 190,101 - Dsui_0189 0.23 +0.2 190,153 + Dsui_0189 0.35 +0.2 190,153 + Dsui_0189 0.35 +0.2 190,153 + Dsui_0189 0.35 -1.8 190,161 - Dsui_0189 0.37 -1.8 190,161 - Dsui_0189 0.37 -2.1 190,198 + Dsui_0189 0.45 +0.2 190,198 + Dsui_0189 0.45 +0.2 190,212 - Dsui_0189 0.49 -0.8
Or see this region's nucleotide sequence