Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0182 and Dsui_0183 are separated by 2 nucleotides Dsui_0183 and Dsui_0184 are separated by 187 nucleotides Dsui_0184 and Dsui_0185 are separated by 30 nucleotides Dsui_0185 and Dsui_0186 are separated by 23 nucleotides
Dsui_0182: Dsui_0182 - hypothetical protein, at 183,690 to 184,331
_0182
Dsui_0183: Dsui_0183 - SOS response transcriptional repressor, RecA-mediated autopeptidase, at 184,334 to 184,930
_0183
Dsui_0184: Dsui_0184 - putative transcriptional regulator, at 185,118 to 185,351
_0184
Dsui_0185: Dsui_0185 - hypothetical protein, at 185,382 to 185,846
_0185
Dsui_0186: Dsui_0186 - DNA/RNA helicase, superfamily II, SNF2 family, at 185,870 to 188,398
_0186
Position (kb)
184
185 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 183.336 kb on + strand at 183.344 kb on - strand at 183.428 kb on - strand at 183.501 kb on + strand at 183.540 kb on + strand at 183.545 kb on + strand at 183.590 kb on - strand at 183.619 kb on - strand at 183.622 kb on + strand at 183.634 kb on + strand at 183.743 kb on - strand at 183.743 kb on - strand at 183.762 kb on - strand, within Dsui_0182 at 183.768 kb on - strand, within Dsui_0182 at 183.768 kb on - strand, within Dsui_0182 at 183.773 kb on - strand, within Dsui_0182 at 183.786 kb on + strand, within Dsui_0182 at 183.848 kb on - strand, within Dsui_0182 at 183.861 kb on + strand, within Dsui_0182 at 183.863 kb on + strand, within Dsui_0182 at 183.936 kb on + strand, within Dsui_0182 at 183.947 kb on - strand, within Dsui_0182 at 183.994 kb on + strand, within Dsui_0182 at 183.997 kb on - strand, within Dsui_0182 at 184.014 kb on + strand, within Dsui_0182 at 184.022 kb on - strand, within Dsui_0182 at 184.066 kb on + strand, within Dsui_0182 at 184.066 kb on + strand, within Dsui_0182 at 184.067 kb on + strand, within Dsui_0182 at 184.067 kb on + strand, within Dsui_0182 at 184.075 kb on - strand, within Dsui_0182 at 184.108 kb on - strand, within Dsui_0182 at 184.145 kb on + strand, within Dsui_0182 at 184.179 kb on - strand, within Dsui_0182 at 184.341 kb on - strand at 185.099 kb on - strand at 185.108 kb on - strand at 185.161 kb on - strand, within Dsui_0184 at 185.270 kb on - strand, within Dsui_0184 at 185.397 kb on + strand at 185.510 kb on - strand, within Dsui_0185 at 185.554 kb on - strand, within Dsui_0185 at 185.592 kb on - strand, within Dsui_0185 at 185.665 kb on + strand, within Dsui_0185 at 185.776 kb on + strand, within Dsui_0185 at 185.843 kb on - strand at 185.843 kb on - strand at 185.843 kb on - strand at 185.848 kb on - strand at 185.885 kb on - strand at 185.898 kb on - strand at 185.907 kb on + strand at 185.907 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 183,336 + +0.2 183,344 - -0.0 183,428 - +0.2 183,501 + -2.8 183,540 + -1.8 183,545 + +0.2 183,590 - +0.4 183,619 - -0.0 183,622 + +0.2 183,634 + +0.2 183,743 - -0.0 183,743 - -0.8 183,762 - Dsui_0182 0.11 -0.5 183,768 - Dsui_0182 0.12 -0.6 183,768 - Dsui_0182 0.12 -0.0 183,773 - Dsui_0182 0.13 -0.1 183,786 + Dsui_0182 0.15 +0.2 183,848 - Dsui_0182 0.25 +0.0 183,861 + Dsui_0182 0.27 -2.1 183,863 + Dsui_0182 0.27 -0.8 183,936 + Dsui_0182 0.38 -2.1 183,947 - Dsui_0182 0.40 -0.1 183,994 + Dsui_0182 0.47 -0.8 183,997 - Dsui_0182 0.48 -0.3 184,014 + Dsui_0182 0.50 -0.8 184,022 - Dsui_0182 0.52 -0.1 184,066 + Dsui_0182 0.59 -0.8 184,066 + Dsui_0182 0.59 -2.8 184,067 + Dsui_0182 0.59 -3.0 184,067 + Dsui_0182 0.59 -1.4 184,075 - Dsui_0182 0.60 -0.1 184,108 - Dsui_0182 0.65 -0.6 184,145 + Dsui_0182 0.71 -0.8 184,179 - Dsui_0182 0.76 +0.0 184,341 - -0.2 185,099 - -1.8 185,108 - -0.8 185,161 - Dsui_0184 0.18 +0.2 185,270 - Dsui_0184 0.65 -0.8 185,397 + +0.2 185,510 - Dsui_0185 0.28 +1.2 185,554 - Dsui_0185 0.37 -1.8 185,592 - Dsui_0185 0.45 -0.8 185,665 + Dsui_0185 0.61 -0.8 185,776 + Dsui_0185 0.85 +0.2 185,843 - +0.2 185,843 - -1.4 185,843 - +0.2 185,848 - -1.4 185,885 - +0.2 185,898 - +0.2 185,907 + +0.2 185,907 + -1.8
Or see this region's nucleotide sequence