Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0171 and Dsui_0172 overlap by 4 nucleotides Dsui_0172 and Dsui_0173 overlap by 4 nucleotides Dsui_0173 and Dsui_0174 overlap by 4 nucleotides Dsui_0174 and Dsui_0175 overlap by 1 nucleotides
Dsui_0171: Dsui_0171 - putative transcriptional regulator, at 174,852 to 175,070
_0171
Dsui_0172: Dsui_0172 - hypothetical protein, at 175,067 to 175,741
_0172
Dsui_0173: Dsui_0173 - site-specific DNA methylase, at 175,738 to 177,546
_0173
Dsui_0174: Dsui_0174 - hypothetical protein, at 177,543 to 178,073
_0174
Dsui_0175: Dsui_0175 - hypothetical protein, at 178,073 to 179,881
_0175
Position (kb) 175
176
177
178 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 174.753 kb on + strand at 174.780 kb on - strand at 174.780 kb on - strand at 174.785 kb on - strand at 174.822 kb on + strand at 174.823 kb on - strand at 174.823 kb on - strand at 174.955 kb on + strand, within Dsui_0171 at 174.982 kb on + strand, within Dsui_0171 at 174.990 kb on - strand, within Dsui_0171 at 175.018 kb on - strand, within Dsui_0171 at 175.028 kb on + strand, within Dsui_0171 at 175.041 kb on - strand, within Dsui_0171 at 175.074 kb on - strand at 175.122 kb on + strand at 175.122 kb on + strand at 175.123 kb on + strand at 175.212 kb on + strand, within Dsui_0172 at 175.215 kb on - strand, within Dsui_0172 at 175.238 kb on + strand at 175.246 kb on - strand, within Dsui_0172 at 175.257 kb on - strand at 175.274 kb on + strand, within Dsui_0172 at 175.307 kb on - strand, within Dsui_0172 at 175.347 kb on + strand, within Dsui_0172 at 175.399 kb on + strand at 175.622 kb on + strand, within Dsui_0172 at 175.625 kb on - strand, within Dsui_0172 at 175.635 kb on + strand, within Dsui_0172 at 175.660 kb on - strand, within Dsui_0172 at 175.735 kb on + strand at 175.809 kb on + strand at 175.817 kb on - strand at 175.834 kb on - strand at 175.867 kb on + strand at 175.875 kb on - strand at 175.950 kb on + strand, within Dsui_0173 at 176.266 kb on - strand, within Dsui_0173 at 176.363 kb on + strand at 176.628 kb on - strand, within Dsui_0173 at 176.629 kb on + strand at 176.728 kb on - strand, within Dsui_0173 at 176.849 kb on + strand, within Dsui_0173 at 176.870 kb on - strand at 176.904 kb on + strand at 176.944 kb on - strand at 177.139 kb on + strand at 177.195 kb on + strand at 177.200 kb on + strand at 177.336 kb on + strand, within Dsui_0173 at 177.443 kb on + strand at 177.534 kb on - strand at 177.649 kb on - strand at 177.705 kb on + strand at 177.766 kb on + strand, within Dsui_0174 at 177.774 kb on - strand, within Dsui_0174 at 177.787 kb on + strand, within Dsui_0174 at 177.945 kb on + strand, within Dsui_0174 at 177.995 kb on - strand at 178.228 kb on + strand at 178.265 kb on + strand, within Dsui_0175 at 178.349 kb on + strand, within Dsui_0175 at 178.354 kb on + strand, within Dsui_0175 at 178.371 kb on - strand, within Dsui_0175
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 174,753 + -0.8 174,780 - +0.2 174,780 - -0.8 174,785 - -0.8 174,822 + +0.2 174,823 - -2.1 174,823 - +0.2 174,955 + Dsui_0171 0.47 -0.8 174,982 + Dsui_0171 0.59 -0.8 174,990 - Dsui_0171 0.63 -2.1 175,018 - Dsui_0171 0.76 -2.1 175,028 + Dsui_0171 0.80 -2.4 175,041 - Dsui_0171 0.86 -2.6 175,074 - -0.8 175,122 + +0.1 175,122 + -0.3 175,123 + +0.1 175,212 + Dsui_0172 0.21 -0.8 175,215 - Dsui_0172 0.22 -2.6 175,238 + -0.8 175,246 - Dsui_0172 0.27 -1.4 175,257 - +0.2 175,274 + Dsui_0172 0.31 +0.2 175,307 - Dsui_0172 0.36 +0.2 175,347 + Dsui_0172 0.41 -3.0 175,399 + +0.2 175,622 + Dsui_0172 0.82 -0.8 175,625 - Dsui_0172 0.83 -0.8 175,635 + Dsui_0172 0.84 -0.8 175,660 - Dsui_0172 0.88 -2.8 175,735 + +0.2 175,809 + +0.2 175,817 - +0.2 175,834 - -1.4 175,867 + -0.8 175,875 - -0.8 175,950 + Dsui_0173 0.12 +0.2 176,266 - Dsui_0173 0.29 -1.8 176,363 + -0.8 176,628 - Dsui_0173 0.49 -2.4 176,629 + +0.2 176,728 - Dsui_0173 0.55 -1.4 176,849 + Dsui_0173 0.61 -1.8 176,870 - +0.2 176,904 + +0.2 176,944 - +0.2 177,139 + +0.2 177,195 + +0.2 177,200 + +0.2 177,336 + Dsui_0173 0.88 +0.2 177,443 + -0.8 177,534 - -1.8 177,649 - +0.2 177,705 + -0.8 177,766 + Dsui_0174 0.42 -1.8 177,774 - Dsui_0174 0.44 -2.4 177,787 + Dsui_0174 0.46 -2.1 177,945 + Dsui_0174 0.76 -3.0 177,995 - +0.2 178,228 + -1.4 178,265 + Dsui_0175 0.11 +0.2 178,349 + Dsui_0175 0.15 +0.2 178,354 + Dsui_0175 0.16 -0.8 178,371 - Dsui_0175 0.16 -0.8
Or see this region's nucleotide sequence