Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0155 and Dsui_0156 are separated by 171 nucleotides Dsui_0156 and Dsui_0157 are separated by 10 nucleotides Dsui_0157 and Dsui_0158 are separated by 64 nucleotides
Dsui_0155: Dsui_0155 - RNA polymerase sigma factor, sigma-70 family, at 161,234 to 161,806
_0155
Dsui_0156: Dsui_0156 - thiosulfate reductase cytochrome B subunit (membrane anchoring protein), at 161,978 to 162,574
_0156
Dsui_0157: Dsui_0157 - sulfite oxidase-like oxidoreductase, at 162,585 to 163,373
_0157
Dsui_0158: Dsui_0158 - pentapeptide MXKDX repeat protein, at 163,438 to 163,677
_0158
Position (kb) 162
163
164 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 161.600 kb on - strand, within Dsui_0155 at 161.602 kb on - strand, within Dsui_0155 at 161.602 kb on - strand, within Dsui_0155 at 161.628 kb on - strand, within Dsui_0155 at 161.629 kb on + strand, within Dsui_0155 at 161.635 kb on - strand, within Dsui_0155 at 161.651 kb on + strand, within Dsui_0155 at 161.659 kb on - strand, within Dsui_0155 at 161.659 kb on - strand, within Dsui_0155 at 161.659 kb on - strand, within Dsui_0155 at 161.659 kb on - strand, within Dsui_0155 at 161.659 kb on - strand, within Dsui_0155 at 161.680 kb on + strand, within Dsui_0155 at 161.685 kb on + strand, within Dsui_0155 at 161.714 kb on - strand, within Dsui_0155 at 161.723 kb on + strand, within Dsui_0155 at 161.724 kb on + strand, within Dsui_0155 at 161.729 kb on + strand, within Dsui_0155 at 161.734 kb on + strand, within Dsui_0155 at 161.734 kb on + strand, within Dsui_0155 at 161.734 kb on + strand, within Dsui_0155 at 161.737 kb on - strand, within Dsui_0155 at 161.737 kb on - strand, within Dsui_0155 at 161.742 kb on - strand, within Dsui_0155 at 161.742 kb on - strand, within Dsui_0155 at 161.742 kb on - strand, within Dsui_0155 at 161.742 kb on - strand, within Dsui_0155 at 161.745 kb on + strand, within Dsui_0155 at 161.753 kb on + strand at 161.753 kb on - strand at 161.760 kb on + strand at 161.762 kb on + strand at 161.766 kb on + strand at 161.770 kb on - strand at 161.770 kb on - strand at 161.770 kb on - strand at 161.770 kb on - strand at 161.770 kb on - strand at 161.781 kb on + strand at 161.798 kb on - strand at 161.798 kb on - strand at 161.803 kb on + strand at 161.812 kb on + strand at 161.817 kb on + strand at 161.817 kb on + strand at 161.817 kb on + strand at 161.835 kb on + strand at 161.838 kb on + strand at 161.864 kb on + strand at 161.871 kb on + strand at 161.871 kb on + strand at 161.872 kb on + strand at 161.872 kb on + strand at 161.872 kb on + strand at 161.872 kb on + strand at 161.878 kb on - strand at 161.879 kb on - strand at 161.879 kb on - strand at 161.879 kb on - strand at 161.879 kb on - strand at 161.879 kb on - strand at 161.880 kb on - strand at 161.880 kb on - strand at 161.889 kb on + strand at 161.895 kb on + strand at 161.897 kb on + strand at 161.897 kb on + strand at 161.902 kb on + strand at 161.905 kb on - strand at 161.907 kb on + strand at 161.907 kb on + strand at 161.909 kb on + strand at 161.912 kb on + strand at 161.915 kb on - strand at 161.915 kb on - strand at 161.915 kb on - strand at 161.929 kb on + strand at 161.929 kb on + strand at 161.929 kb on + strand at 161.937 kb on - strand at 161.937 kb on - strand at 161.939 kb on + strand at 161.953 kb on - strand at 161.962 kb on + strand at 161.962 kb on + strand at 161.964 kb on - strand at 161.968 kb on + strand at 161.968 kb on + strand at 161.968 kb on + strand at 161.968 kb on + strand at 161.970 kb on - strand at 161.970 kb on - strand at 161.970 kb on - strand at 161.970 kb on - strand at 161.976 kb on - strand at 161.976 kb on - strand at 161.976 kb on - strand at 161.976 kb on - strand at 161.983 kb on - strand at 161.989 kb on + strand at 161.989 kb on + strand at 161.989 kb on + strand at 161.997 kb on - strand at 161.997 kb on - strand at 162.013 kb on + strand at 162.020 kb on - strand at 162.020 kb on - strand at 162.021 kb on - strand at 162.030 kb on + strand at 162.030 kb on + strand at 162.030 kb on + strand at 162.031 kb on + strand at 162.034 kb on - strand at 162.036 kb on + strand at 162.036 kb on + strand at 162.038 kb on - strand, within Dsui_0156 at 162.038 kb on - strand, within Dsui_0156 at 162.038 kb on - strand, within Dsui_0156 at 162.039 kb on - strand, within Dsui_0156 at 162.046 kb on - strand, within Dsui_0156 at 162.047 kb on + strand, within Dsui_0156 at 162.055 kb on - strand, within Dsui_0156 at 162.097 kb on - strand, within Dsui_0156 at 162.102 kb on - strand, within Dsui_0156 at 162.102 kb on - strand, within Dsui_0156 at 162.128 kb on + strand, within Dsui_0156 at 162.135 kb on + strand, within Dsui_0156 at 162.140 kb on - strand, within Dsui_0156 at 162.147 kb on - strand, within Dsui_0156 at 162.160 kb on - strand, within Dsui_0156 at 162.170 kb on + strand, within Dsui_0156 at 162.171 kb on + strand, within Dsui_0156 at 162.202 kb on - strand, within Dsui_0156 at 162.251 kb on - strand, within Dsui_0156 at 162.265 kb on + strand, within Dsui_0156 at 162.308 kb on - strand, within Dsui_0156 at 162.335 kb on + strand, within Dsui_0156 at 162.343 kb on - strand, within Dsui_0156 at 162.348 kb on + strand, within Dsui_0156 at 162.356 kb on - strand, within Dsui_0156 at 162.381 kb on + strand, within Dsui_0156 at 162.396 kb on + strand, within Dsui_0156 at 162.404 kb on - strand, within Dsui_0156 at 162.406 kb on + strand, within Dsui_0156 at 162.412 kb on - strand, within Dsui_0156 at 162.475 kb on + strand, within Dsui_0156 at 162.485 kb on - strand, within Dsui_0156 at 162.510 kb on + strand, within Dsui_0156 at 162.518 kb on - strand at 162.528 kb on - strand at 162.528 kb on - strand at 162.534 kb on - strand at 162.543 kb on - strand at 162.593 kb on - strand at 162.612 kb on - strand at 162.748 kb on + strand, within Dsui_0157 at 162.774 kb on - strand, within Dsui_0157 at 162.810 kb on - strand, within Dsui_0157 at 162.827 kb on + strand, within Dsui_0157 at 162.831 kb on - strand, within Dsui_0157 at 162.847 kb on + strand, within Dsui_0157 at 162.847 kb on + strand, within Dsui_0157 at 162.881 kb on - strand, within Dsui_0157 at 162.914 kb on - strand, within Dsui_0157 at 162.934 kb on + strand, within Dsui_0157 at 162.936 kb on - strand, within Dsui_0157 at 162.956 kb on - strand, within Dsui_0157 at 162.995 kb on - strand, within Dsui_0157 at 163.020 kb on + strand, within Dsui_0157 at 163.020 kb on + strand, within Dsui_0157 at 163.022 kb on + strand, within Dsui_0157 at 163.046 kb on - strand, within Dsui_0157 at 163.073 kb on - strand, within Dsui_0157 at 163.081 kb on - strand, within Dsui_0157 at 163.084 kb on + strand, within Dsui_0157 at 163.084 kb on + strand, within Dsui_0157 at 163.084 kb on + strand, within Dsui_0157 at 163.092 kb on - strand, within Dsui_0157 at 163.099 kb on + strand, within Dsui_0157 at 163.146 kb on + strand, within Dsui_0157 at 163.153 kb on - strand, within Dsui_0157 at 163.212 kb on + strand, within Dsui_0157 at 163.274 kb on - strand, within Dsui_0157 at 163.316 kb on + strand at 163.319 kb on - strand at 163.322 kb on - strand at 163.324 kb on - strand at 163.330 kb on - strand at 163.341 kb on + strand at 163.341 kb on + strand at 163.347 kb on + strand at 163.347 kb on + strand at 163.347 kb on + strand at 163.349 kb on - strand at 163.355 kb on - strand at 163.355 kb on - strand at 163.355 kb on - strand at 163.385 kb on + strand at 163.393 kb on - strand at 163.393 kb on - strand at 163.393 kb on - strand at 163.399 kb on + strand at 163.410 kb on + strand at 163.418 kb on + strand at 163.456 kb on + strand at 163.462 kb on - strand, within Dsui_0158 at 163.466 kb on + strand, within Dsui_0158 at 163.466 kb on + strand, within Dsui_0158 at 163.466 kb on + strand, within Dsui_0158 at 163.466 kb on + strand, within Dsui_0158 at 163.466 kb on + strand, within Dsui_0158 at 163.466 kb on + strand, within Dsui_0158 at 163.472 kb on + strand, within Dsui_0158 at 163.474 kb on - strand, within Dsui_0158 at 163.474 kb on - strand, within Dsui_0158 at 163.474 kb on - strand, within Dsui_0158 at 163.474 kb on - strand, within Dsui_0158 at 163.474 kb on - strand, within Dsui_0158 at 163.474 kb on - strand, within Dsui_0158 at 163.474 kb on - strand, within Dsui_0158 at 163.474 kb on - strand, within Dsui_0158 at 163.474 kb on - strand, within Dsui_0158 at 163.474 kb on - strand, within Dsui_0158 at 163.480 kb on - strand, within Dsui_0158 at 163.524 kb on + strand, within Dsui_0158 at 163.532 kb on - strand, within Dsui_0158 at 163.551 kb on + strand, within Dsui_0158 at 163.551 kb on - strand, within Dsui_0158 at 163.560 kb on + strand, within Dsui_0158 at 163.581 kb on + strand, within Dsui_0158 at 163.589 kb on - strand, within Dsui_0158 at 163.592 kb on - strand, within Dsui_0158 at 163.598 kb on - strand, within Dsui_0158 at 163.656 kb on - strand at 163.678 kb on + strand at 163.712 kb on - strand at 163.730 kb on + strand at 163.744 kb on - strand at 163.764 kb on - strand at 163.775 kb on + strand at 163.775 kb on + strand at 163.775 kb on + strand at 163.783 kb on - strand at 163.783 kb on - strand at 163.783 kb on - strand at 163.805 kb on - strand at 163.810 kb on - strand at 163.828 kb on - strand at 163.831 kb on + strand at 163.831 kb on + strand at 163.831 kb on + strand at 163.831 kb on + strand at 163.831 kb on + strand at 163.831 kb on + strand at 163.831 kb on + strand at 163.831 kb on + strand at 163.832 kb on + strand at 163.832 kb on + strand at 163.839 kb on - strand at 163.839 kb on - strand at 163.839 kb on - strand at 163.839 kb on - strand at 163.839 kb on - strand at 163.867 kb on + strand at 163.873 kb on - strand at 163.873 kb on - strand at 163.878 kb on - strand at 163.884 kb on - strand at 163.913 kb on - strand at 163.925 kb on - strand at 163.957 kb on - strand at 163.970 kb on + strand at 163.978 kb on - strand at 163.978 kb on - strand at 163.980 kb on + strand at 164.009 kb on - strand at 164.010 kb on + strand at 164.025 kb on + strand at 164.025 kb on + strand at 164.051 kb on + strand at 164.059 kb on - strand at 164.068 kb on + strand at 164.110 kb on + strand at 164.124 kb on + strand at 164.128 kb on - strand at 164.138 kb on + strand at 164.149 kb on + strand at 164.149 kb on + strand at 164.149 kb on + strand at 164.149 kb on + strand at 164.149 kb on + strand at 164.157 kb on - strand at 164.157 kb on - strand at 164.157 kb on - strand at 164.157 kb on - strand at 164.157 kb on - strand at 164.209 kb on + strand at 164.240 kb on + strand at 164.251 kb on - strand at 164.251 kb on - strand at 164.251 kb on - strand at 164.260 kb on + strand at 164.263 kb on - strand at 164.263 kb on - strand at 164.272 kb on + strand at 164.292 kb on + strand at 164.328 kb on - strand at 164.328 kb on - strand at 164.333 kb on - strand at 164.346 kb on - strand at 164.360 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 161,600 - Dsui_0155 0.64 -0.0 161,602 - Dsui_0155 0.64 +0.1 161,602 - Dsui_0155 0.64 +0.3 161,628 - Dsui_0155 0.69 -0.0 161,629 + Dsui_0155 0.69 -1.4 161,635 - Dsui_0155 0.70 -0.1 161,651 + Dsui_0155 0.73 -1.6 161,659 - Dsui_0155 0.74 +0.4 161,659 - Dsui_0155 0.74 -0.2 161,659 - Dsui_0155 0.74 -0.0 161,659 - Dsui_0155 0.74 +0.3 161,659 - Dsui_0155 0.74 +0.7 161,680 + Dsui_0155 0.78 +1.8 161,685 + Dsui_0155 0.79 -2.8 161,714 - Dsui_0155 0.84 -0.6 161,723 + Dsui_0155 0.85 +0.2 161,724 + Dsui_0155 0.86 +0.2 161,729 + Dsui_0155 0.86 -0.8 161,734 + Dsui_0155 0.87 +0.2 161,734 + Dsui_0155 0.87 +0.2 161,734 + Dsui_0155 0.87 -0.8 161,737 - Dsui_0155 0.88 -0.3 161,737 - Dsui_0155 0.88 +0.2 161,742 - Dsui_0155 0.89 +0.2 161,742 - Dsui_0155 0.89 -2.0 161,742 - Dsui_0155 0.89 -0.5 161,742 - Dsui_0155 0.89 +0.3 161,745 + Dsui_0155 0.89 -0.8 161,753 + -1.8 161,753 - -0.3 161,760 + -0.8 161,762 + -1.4 161,766 + +0.2 161,770 - +0.1 161,770 - -2.1 161,770 - -0.4 161,770 - -0.2 161,770 - +0.0 161,781 + -0.8 161,798 - +0.2 161,798 - +0.1 161,803 + +0.2 161,812 + -1.8 161,817 + -1.8 161,817 + -1.4 161,817 + -1.8 161,835 + -1.8 161,838 + -1.4 161,864 + +0.2 161,871 + +0.2 161,871 + -0.8 161,872 + -2.6 161,872 + -0.8 161,872 + -2.4 161,872 + -1.4 161,878 - +0.7 161,879 - -2.8 161,879 - -1.0 161,879 - -1.2 161,879 - -0.8 161,879 - +0.2 161,880 - -3.1 161,880 - -0.8 161,889 + -0.8 161,895 + -2.0 161,897 + -1.8 161,897 + -0.2 161,902 + -0.8 161,905 - +0.2 161,907 + +0.2 161,907 + -3.2 161,909 + -0.8 161,912 + +0.2 161,915 - -0.8 161,915 - -0.1 161,915 - -1.2 161,929 + +0.2 161,929 + -0.2 161,929 + -1.8 161,937 - -2.2 161,937 - -0.4 161,939 + +0.2 161,953 - -0.8 161,962 + -1.4 161,962 + +0.2 161,964 - -2.4 161,968 + +0.2 161,968 + +0.2 161,968 + +0.2 161,968 + +0.2 161,970 - +0.2 161,970 - -3.0 161,970 - -0.8 161,970 - -0.8 161,976 - -0.8 161,976 - +0.2 161,976 - +0.2 161,976 - +0.2 161,983 - -1.4 161,989 + +0.2 161,989 + -3.7 161,989 + -0.8 161,997 - -2.1 161,997 - +0.2 162,013 + -1.8 162,020 - +0.2 162,020 - -2.6 162,021 - -1.4 162,030 + -1.4 162,030 + -1.4 162,030 + +0.2 162,031 + -0.8 162,034 - -0.8 162,036 + +0.2 162,036 + +0.2 162,038 - Dsui_0156 0.10 -2.4 162,038 - Dsui_0156 0.10 -4.4 162,038 - Dsui_0156 0.10 +0.2 162,039 - Dsui_0156 0.10 -1.8 162,046 - Dsui_0156 0.11 -0.8 162,047 + Dsui_0156 0.12 -1.8 162,055 - Dsui_0156 0.13 -0.8 162,097 - Dsui_0156 0.20 +0.2 162,102 - Dsui_0156 0.21 -1.4 162,102 - Dsui_0156 0.21 +0.2 162,128 + Dsui_0156 0.25 +0.2 162,135 + Dsui_0156 0.26 -3.4 162,140 - Dsui_0156 0.27 -1.8 162,147 - Dsui_0156 0.28 +0.2 162,160 - Dsui_0156 0.30 -1.4 162,170 + Dsui_0156 0.32 +0.2 162,171 + Dsui_0156 0.32 -2.6 162,202 - Dsui_0156 0.38 -1.8 162,251 - Dsui_0156 0.46 +0.2 162,265 + Dsui_0156 0.48 -2.1 162,308 - Dsui_0156 0.55 -0.8 162,335 + Dsui_0156 0.60 +0.2 162,343 - Dsui_0156 0.61 +0.2 162,348 + Dsui_0156 0.62 -2.4 162,356 - Dsui_0156 0.63 +0.2 162,381 + Dsui_0156 0.68 +0.2 162,396 + Dsui_0156 0.70 -3.2 162,404 - Dsui_0156 0.71 +0.2 162,406 + Dsui_0156 0.72 -2.4 162,412 - Dsui_0156 0.73 -2.1 162,475 + Dsui_0156 0.83 +0.2 162,485 - Dsui_0156 0.85 +0.2 162,510 + Dsui_0156 0.89 -1.4 162,518 - +0.2 162,528 - +0.2 162,528 - -1.4 162,534 - -1.8 162,543 - +0.2 162,593 - -0.7 162,612 - +0.2 162,748 + Dsui_0157 0.21 +0.2 162,774 - Dsui_0157 0.24 +0.2 162,810 - Dsui_0157 0.29 -2.6 162,827 + Dsui_0157 0.31 -2.1 162,831 - Dsui_0157 0.31 +0.2 162,847 + Dsui_0157 0.33 +0.2 162,847 + Dsui_0157 0.33 +0.2 162,881 - Dsui_0157 0.38 -1.8 162,914 - Dsui_0157 0.42 -0.8 162,934 + Dsui_0157 0.44 -1.8 162,936 - Dsui_0157 0.44 -1.4 162,956 - Dsui_0157 0.47 -1.7 162,995 - Dsui_0157 0.52 -1.4 163,020 + Dsui_0157 0.55 +0.2 163,020 + Dsui_0157 0.55 -0.8 163,022 + Dsui_0157 0.55 -1.4 163,046 - Dsui_0157 0.58 +1.2 163,073 - Dsui_0157 0.62 -0.5 163,081 - Dsui_0157 0.63 -1.1 163,084 + Dsui_0157 0.63 -1.4 163,084 + Dsui_0157 0.63 -2.6 163,084 + Dsui_0157 0.63 -0.8 163,092 - Dsui_0157 0.64 +0.2 163,099 + Dsui_0157 0.65 +0.2 163,146 + Dsui_0157 0.71 -1.4 163,153 - Dsui_0157 0.72 -0.4 163,212 + Dsui_0157 0.79 +0.2 163,274 - Dsui_0157 0.87 -0.8 163,316 + +0.2 163,319 - +0.2 163,322 - -0.8 163,324 - -0.8 163,330 - -2.4 163,341 + +0.2 163,341 + -2.4 163,347 + -1.8 163,347 + -1.8 163,347 + +0.2 163,349 - +0.2 163,355 - -0.8 163,355 - -1.8 163,355 - -2.6 163,385 + -1.4 163,393 - -2.1 163,393 - -1.4 163,393 - -1.8 163,399 + -2.1 163,410 + +0.2 163,418 + +0.2 163,456 + -0.8 163,462 - Dsui_0158 0.10 -1.0 163,466 + Dsui_0158 0.12 -3.0 163,466 + Dsui_0158 0.12 -2.8 163,466 + Dsui_0158 0.12 -0.8 163,466 + Dsui_0158 0.12 -2.4 163,466 + Dsui_0158 0.12 -1.8 163,466 + Dsui_0158 0.12 -2.4 163,472 + Dsui_0158 0.14 -0.8 163,474 - Dsui_0158 0.15 +1.2 163,474 - Dsui_0158 0.15 -1.8 163,474 - Dsui_0158 0.15 -0.8 163,474 - Dsui_0158 0.15 -0.8 163,474 - Dsui_0158 0.15 +0.2 163,474 - Dsui_0158 0.15 +0.2 163,474 - Dsui_0158 0.15 +1.8 163,474 - Dsui_0158 0.15 +0.2 163,474 - Dsui_0158 0.15 -0.8 163,474 - Dsui_0158 0.15 +0.2 163,480 - Dsui_0158 0.17 +0.2 163,524 + Dsui_0158 0.36 +0.2 163,532 - Dsui_0158 0.39 -0.8 163,551 + Dsui_0158 0.47 -0.8 163,551 - Dsui_0158 0.47 -2.1 163,560 + Dsui_0158 0.51 -0.8 163,581 + Dsui_0158 0.60 -2.6 163,589 - Dsui_0158 0.63 -0.8 163,592 - Dsui_0158 0.64 +0.2 163,598 - Dsui_0158 0.67 -0.8 163,656 - -2.1 163,678 + -0.8 163,712 - +0.2 163,730 + +0.2 163,744 - -0.4 163,764 - -0.8 163,775 + +0.2 163,775 + -0.8 163,775 + -1.4 163,783 - -0.4 163,783 - -0.8 163,783 - -1.4 163,805 - -2.6 163,810 - +0.2 163,828 - +0.2 163,831 + -1.8 163,831 + +1.2 163,831 + -2.6 163,831 + +0.2 163,831 + -2.1 163,831 + +0.2 163,831 + -0.8 163,831 + -2.6 163,832 + +0.2 163,832 + +0.2 163,839 - -1.4 163,839 - -2.4 163,839 - -1.1 163,839 - -0.8 163,839 - +2.2 163,867 + +0.2 163,873 - -0.8 163,873 - +0.2 163,878 - -2.8 163,884 - +0.2 163,913 - +0.2 163,925 - -2.1 163,957 - -1.8 163,970 + +1.0 163,978 - -0.8 163,978 - +0.2 163,980 + -0.8 164,009 - -0.8 164,010 + -1.4 164,025 + +0.2 164,025 + -1.4 164,051 + -2.6 164,059 - -2.4 164,068 + +0.2 164,110 + -1.4 164,124 + -1.4 164,128 - +0.2 164,138 + +0.2 164,149 + +0.2 164,149 + -0.8 164,149 + +0.2 164,149 + +0.2 164,149 + -2.1 164,157 - -1.4 164,157 - -0.8 164,157 - +0.2 164,157 - +0.2 164,157 - -0.8 164,209 + +0.2 164,240 + -0.4 164,251 - +0.2 164,251 - -2.6 164,251 - -0.8 164,260 + +0.2 164,263 - -2.1 164,263 - +0.2 164,272 + +0.2 164,292 + +0.2 164,328 - -0.8 164,328 - -2.4 164,333 - -1.5 164,346 - +0.2 164,360 - -0.8
Or see this region's nucleotide sequence