Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0121 and Dsui_0122 are separated by 100 nucleotides Dsui_0122 and Dsui_0123 are separated by 3 nucleotides Dsui_0123 and Dsui_0124 are separated by 9 nucleotides
Dsui_0121: Dsui_0121 - glutamyl-tRNA reductase, at 119,122 to 120,393
_0121
Dsui_0122: Dsui_0122 - D-tyrosyl-tRNA(Tyr) deacylase, at 120,494 to 120,964
_0122
Dsui_0123: Dsui_0123 - hypothetical protein, at 120,968 to 121,624
_0123
Dsui_0124: Dsui_0124 - lactate dehydrogenase-like oxidoreductase, at 121,634 to 122,602
_0124
Position (kb)
120
121 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 120.429 kb on - strand at 120.447 kb on - strand at 120.517 kb on + strand at 120.714 kb on - strand, within Dsui_0122 at 120.745 kb on + strand at 120.753 kb on - strand, within Dsui_0122 at 120.889 kb on - strand, within Dsui_0122 at 120.907 kb on + strand at 120.974 kb on - strand at 120.974 kb on - strand at 121.029 kb on - strand at 121.036 kb on - strand, within Dsui_0123 at 121.052 kb on + strand, within Dsui_0123 at 121.138 kb on - strand, within Dsui_0123 at 121.149 kb on - strand, within Dsui_0123 at 121.219 kb on + strand, within Dsui_0123 at 121.219 kb on + strand at 121.219 kb on + strand at 121.250 kb on + strand, within Dsui_0123 at 121.265 kb on + strand at 121.399 kb on - strand, within Dsui_0123 at 121.445 kb on - strand, within Dsui_0123 at 121.518 kb on - strand, within Dsui_0123 at 121.683 kb on + strand at 121.683 kb on + strand at 121.691 kb on - strand at 121.710 kb on + strand at 121.736 kb on + strand at 121.737 kb on + strand at 121.783 kb on + strand, within Dsui_0124 at 121.783 kb on + strand at 121.791 kb on - strand, within Dsui_0124 at 121.842 kb on - strand, within Dsui_0124 at 121.935 kb on - strand, within Dsui_0124 at 121.935 kb on - strand, within Dsui_0124
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 120,429 - -0.5 120,447 - -1.2 120,517 + -0.8 120,714 - Dsui_0122 0.47 +0.3 120,745 + +0.2 120,753 - Dsui_0122 0.55 +0.2 120,889 - Dsui_0122 0.84 +0.2 120,907 + -0.8 120,974 - +0.2 120,974 - -0.9 121,029 - -0.1 121,036 - Dsui_0123 0.10 -0.1 121,052 + Dsui_0123 0.13 -2.6 121,138 - Dsui_0123 0.26 -0.2 121,149 - Dsui_0123 0.28 +0.7 121,219 + Dsui_0123 0.38 -2.4 121,219 + -1.4 121,219 + -1.4 121,250 + Dsui_0123 0.43 +0.2 121,265 + -0.8 121,399 - Dsui_0123 0.66 -0.8 121,445 - Dsui_0123 0.73 +0.2 121,518 - Dsui_0123 0.84 -0.2 121,683 + +0.2 121,683 + +0.2 121,691 - +0.2 121,710 + -0.8 121,736 + -1.4 121,737 + +0.2 121,783 + Dsui_0124 0.15 -3.5 121,783 + -0.8 121,791 - Dsui_0124 0.16 +0.1 121,842 - Dsui_0124 0.21 -0.5 121,935 - Dsui_0124 0.31 -0.5 121,935 - Dsui_0124 0.31 -0.7
Or see this region's nucleotide sequence