Strain Fitness in Dechlorosoma suillum PS around Dsui_0120

Experiment: ALP with perchlorate 3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0118 and Dsui_0119 are separated by 31 nucleotidesDsui_0119 and Dsui_0120 are separated by 1 nucleotidesDsui_0120 and Dsui_0121 are separated by 61 nucleotides Dsui_0118: Dsui_0118 - monothiol glutaredoxin, Grx4 family, at 116,764 to 117,084 _0118 Dsui_0119: Dsui_0119 - protein-(glutamine-N5) methyltransferase, release factor-specific, at 117,116 to 117,961 _0119 Dsui_0120: Dsui_0120 - peptide chain release factor 1, at 117,963 to 119,060 _0120 Dsui_0121: Dsui_0121 - glutamyl-tRNA reductase, at 119,122 to 120,393 _0121 Position (kb) 117 118 119 120Strain fitness (log2 ratio) -1 0 1at 116.970 kb on - strand, within Dsui_0118at 116.974 kb on - strand, within Dsui_0118at 117.036 kb on - strand, within Dsui_0118at 117.069 kb on + strandat 117.094 kb on - strandat 117.931 kb on - strandat 117.939 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM
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116,970 - Dsui_0118 0.64 +0.5
116,974 - Dsui_0118 0.65 +0.3
117,036 - Dsui_0118 0.85 +0.6
117,069 + +0.2
117,094 - +0.6
117,931 - -0.2
117,939 + -1.4

Or see this region's nucleotide sequence