Experiment: ALP with perchlorate 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0108 and Dsui_0109 are separated by 135 nucleotides Dsui_0109 and Dsui_0110 overlap by 4 nucleotides Dsui_0110 and Dsui_0111 are separated by 182 nucleotides
Dsui_0108: Dsui_0108 - hypothetical protein, at 107,013 to 107,132
_0108
Dsui_0109: Dsui_0109 - response regulator of the LytR/AlgR family, at 107,268 to 108,053
_0109
Dsui_0110: Dsui_0110 - Histidine kinase, at 108,050 to 109,006
_0110
Dsui_0111: Dsui_0111 - argininosuccinate lyase, at 109,189 to 110,574
_0111
Position (kb)
108
109
110 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 107.068 kb on - strand at 107.096 kb on + strand, within Dsui_0108 at 107.146 kb on + strand at 107.146 kb on + strand at 107.154 kb on - strand at 107.154 kb on - strand at 107.159 kb on + strand at 107.177 kb on + strand at 107.177 kb on + strand at 107.194 kb on - strand at 107.256 kb on + strand at 107.264 kb on - strand at 107.332 kb on + strand at 107.332 kb on + strand at 107.340 kb on - strand at 107.340 kb on - strand at 107.342 kb on + strand at 107.395 kb on - strand, within Dsui_0109 at 107.433 kb on - strand, within Dsui_0109 at 107.472 kb on + strand, within Dsui_0109 at 107.504 kb on + strand at 107.581 kb on - strand at 107.648 kb on - strand, within Dsui_0109 at 107.648 kb on - strand, within Dsui_0109 at 107.658 kb on + strand, within Dsui_0109 at 107.700 kb on - strand, within Dsui_0109 at 107.703 kb on + strand, within Dsui_0109 at 107.724 kb on - strand, within Dsui_0109 at 107.759 kb on - strand, within Dsui_0109 at 107.831 kb on + strand at 107.862 kb on + strand, within Dsui_0109 at 107.985 kb on - strand at 107.985 kb on - strand at 108.040 kb on - strand at 108.065 kb on + strand at 108.068 kb on - strand at 108.078 kb on - strand at 108.165 kb on - strand, within Dsui_0110 at 108.172 kb on + strand at 108.202 kb on + strand at 108.235 kb on + strand at 108.385 kb on - strand, within Dsui_0110 at 108.387 kb on + strand at 108.387 kb on + strand at 108.445 kb on - strand, within Dsui_0110 at 108.461 kb on + strand, within Dsui_0110 at 108.480 kb on + strand, within Dsui_0110 at 108.488 kb on - strand, within Dsui_0110 at 108.488 kb on - strand at 108.515 kb on + strand, within Dsui_0110 at 108.518 kb on - strand at 108.575 kb on - strand, within Dsui_0110 at 108.586 kb on - strand, within Dsui_0110 at 108.658 kb on - strand, within Dsui_0110 at 108.672 kb on - strand, within Dsui_0110 at 108.726 kb on + strand, within Dsui_0110 at 108.783 kb on + strand, within Dsui_0110 at 108.787 kb on + strand at 108.848 kb on + strand, within Dsui_0110 at 108.894 kb on - strand, within Dsui_0110 at 108.953 kb on + strand at 109.034 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 3 mM remove 107,068 - +0.2 107,096 + Dsui_0108 0.69 -1.8 107,146 + +0.2 107,146 + -2.1 107,154 - -1.8 107,154 - +0.2 107,159 + -2.1 107,177 + -0.8 107,177 + -1.4 107,194 - -2.8 107,256 + -1.8 107,264 - +0.2 107,332 + -0.8 107,332 + +0.2 107,340 - -0.8 107,340 - +0.2 107,342 + -2.1 107,395 - Dsui_0109 0.16 +0.2 107,433 - Dsui_0109 0.21 -0.8 107,472 + Dsui_0109 0.26 -3.1 107,504 + +0.2 107,581 - -0.4 107,648 - Dsui_0109 0.48 +0.2 107,648 - Dsui_0109 0.48 -1.4 107,658 + Dsui_0109 0.50 -1.4 107,700 - Dsui_0109 0.55 +1.8 107,703 + Dsui_0109 0.55 -0.8 107,724 - Dsui_0109 0.58 +0.2 107,759 - Dsui_0109 0.62 +0.2 107,831 + -1.4 107,862 + Dsui_0109 0.76 -1.8 107,985 - -2.8 107,985 - +0.2 108,040 - +0.2 108,065 + -2.8 108,068 - +0.2 108,078 - -1.4 108,165 - Dsui_0110 0.12 -1.8 108,172 + +0.2 108,202 + -0.8 108,235 + +0.2 108,385 - Dsui_0110 0.35 +0.2 108,387 + +0.2 108,387 + +0.2 108,445 - Dsui_0110 0.41 +0.2 108,461 + Dsui_0110 0.43 -1.8 108,480 + Dsui_0110 0.45 -1.4 108,488 - Dsui_0110 0.46 -1.8 108,488 - +0.2 108,515 + Dsui_0110 0.49 -2.6 108,518 - +0.2 108,575 - Dsui_0110 0.55 -1.4 108,586 - Dsui_0110 0.56 -0.8 108,658 - Dsui_0110 0.64 -0.8 108,672 - Dsui_0110 0.65 +0.2 108,726 + Dsui_0110 0.71 -2.4 108,783 + Dsui_0110 0.77 +0.2 108,787 + +0.2 108,848 + Dsui_0110 0.83 -1.4 108,894 - Dsui_0110 0.88 -0.8 108,953 + -1.4 109,034 + -2.8
Or see this region's nucleotide sequence